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**Research article**
18 Feb 2019

**Research article** | 18 Feb 2019

SCIAMACHY mesosphere NO model

^{1}Department of Physics, Norwegian University of Science and Technology, Trondheim, Norway^{2}Institute of Meteorology and Climate Research, Karlsruhe Institute of Technology, Karlsruhe, Germany^{3}Institute of Environmental Physics, University of Bremen, Bremen, Germany

^{1}Department of Physics, Norwegian University of Science and Technology, Trondheim, Norway^{2}Institute of Meteorology and Climate Research, Karlsruhe Institute of Technology, Karlsruhe, Germany^{3}Institute of Environmental Physics, University of Bremen, Bremen, Germany

Abstract

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We present an empirical model for nitric oxide (NO) in the mesosphere (≈60–90 km) derived from SCIAMACHY (SCanning Imaging Absorption spectroMeter for Atmospheric CHartoghraphY) limb scan data. This work complements and extends the NOEM (Nitric Oxide Empirical Model; Marsh et al., 2004) and SANOMA (SMR Acquired Nitric Oxide Model Atmosphere; Kiviranta et al., 2018) empirical models in the lower thermosphere. The regression ansatz builds on the heritage of studies by Hendrickx et al. (2017) and the superposed epoch analysis by Sinnhuber et al. (2016) which estimate NO production from particle precipitation.

Our model relates the daily (longitudinally) averaged NO number densities from
SCIAMACHY (Bender et al., 2017b, a) as a function of geomagnetic latitude
to the solar Lyman-*α* and the geomagnetic
AE (auroral electrojet) indices.
We use a non-linear regression model, incorporating a finite and seasonally
varying lifetime for the geomagnetically induced NO.
We estimate the parameters by finding the maximum posterior probability
and calculate the parameter uncertainties using
Markov chain Monte Carlo sampling.
In addition to providing an estimate of the NO content in the mesosphere,
the regression coefficients indicate regions where certain processes dominate.

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Bender, S., Sinnhuber, M., Espy, P. J., and Burrows, J. P.: Mesospheric nitric oxide model from SCIAMACHY data, Atmos. Chem. Phys., 19, 2135-2147, https://doi.org/10.5194/acp-19-2135-2019, 2019.

1 Introduction

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It has been recognized in the past decades that the mesosphere and
stratosphere are coupled in various ways (Baldwin and Dunkerton, 2001). Consequently,
climate models have been evolving to extend to increasingly higher levels in
the atmosphere to improve the accuracy of medium- and long-term predictions.
Nowadays it is not unusual that these models include the mesosphere
(40–90 km) or the lower thermosphere
(90–120 km) (Matthes et al., 2017). It is therefore important to
understand the processes in the mesosphere and lower thermosphere and to find
the important drivers of chemistry and dynamics in that region. The
atmosphere above the stratosphere (*≳*40 km) is coupled to solar and
geomagnetic activity, also known as space weather (Sinnhuber et al., 2012).
Electrons and protons from the solar wind and the radiation belts with
sufficient kinetic energy enter the atmosphere in that region. Since as
charged particles they move along the magnetic field, this precipitation
occurs primarily at high geomagnetic latitudes.

Previously the role of NO in the mesosphere has been identified as an important free radical and in this sense a driver of the chemistry (Kockarts, 1980; Barth, 1992, 1995, 2010; Barth et al., 2009; Roble, 1995; Bailey et al., 2002), particularly during winter when it is long-lived because of reduced photodissociation. NO generated in the region between 90 and 120 km at auroral latitudes is strongly influenced by both solar and geomagnetic activity (Marsh et al., 2004; Sinnhuber et al., 2011, 2016; Hendrickx et al., 2015, 2017). At high latitudes, NO is transported down to the upper stratosphere during winter, usually down to 50 km and occasionally down to 30 km (Siskind et al., 2000; Randall et al., 2007; Funke et al., 2005a, 2014b). At those altitudes and also in the mesosphere, NO participates in the “odd oxygen catalytic cycle which depletes ozone” (Crutzen, 1970). Additional dynamical processes also result in the strong downward transport of mesospheric air into the upper stratosphere, such as the strong downwelling that often occurs in the recovery phase of a sudden stratospheric warming (SSW) (Pérot et al., 2014; Orsolini et al., 2017). This downwelling is typically associated with the formation of an elevated stratopause.

Different instruments have been measuring NO in the mesosphere and lower thermosphere, but at different altitudes and at different local times. Measurements from solar occultation instruments such as Scisat-1/ACE-FTS or AIM/SOFIE are limited in latitude and local time (sunrise and sunset). Global observations from sun-synchronously orbiting satellites are available from Envisat/MIPAS below 70 km daily and 42–172 km every 10 days (Funke et al., 2001, 2005b; Bermejo-Pantaleón et al., 2011); from Odin/SMR between 45 and 115 km (Pérot et al., 2014; Kiviranta et al., 2018); or from Envisat/SCIAMACHY (SCanning Imaging Absorption spectroMeter for Atmospheric CHartoghraphY) between 60 and 90 km daily (Bender et al., 2017b) and 60–160 km every 15 days (Bender et al., 2013). Because the Odin and Envisat orbits are sun-synchronous, the measurement local times are fixed to around 06:00 and 18:00 (Odin) and 10:00 and 22:00 (Envisat). While MIPAS has both daytime and night-time measurements, SCIAMACHY provides daytime (10:00) data because of the measurement principle (fluorescent UV scattering; see Bender et al., 2013, 2017b). Unfortunately, Envisat stopped communicating in April 2012 ,and therefore the data available from MIPAS and SCIAMACHY are limited to nearly 10 years from August 2002 to April 2012. The other aforementioned instruments are still operational and provide ongoing data as long as satellite operations continue.

Chemistry–climate models struggle to simulate the NO amounts and distributions in the mesosphere and lower thermosphere (see, for example, Funke et al., 2017; Randall et al., 2015; Orsolini et al., 2017; Hendrickx et al., 2018). To remedy the situation, some models constrain the NO content at their top layer through observation-based parametrizations. For example, the next generation of climate simulations (CMIP6; see Matthes et al., 2017) and other recent model simulations (Sinnhuber et al., 2018) parametrizes particle effects as derived partly from Envisat/MIPAS NO measurements (Funke et al., 2016).

NO in the mesosphere and lower thermosphere is produced by
N_{2} dissociation,

$$\begin{array}{}\text{(R1)}& {\displaystyle}{\mathrm{N}}_{\mathrm{2}}+h\mathit{\nu}\to \mathrm{N}{(}^{\mathrm{2}}\mathrm{D})+\mathrm{N}{(}^{\mathrm{4}}\mathrm{S})\phantom{\rule{1em}{0ex}}(\mathit{\lambda}<\mathrm{102}\phantom{\rule{0.125em}{0ex}}\mathrm{nm})\phantom{\rule{0.25em}{0ex}},\end{array}$$

followed by the reaction of the excited nitrogen atom N(^{2}D)
with molecular oxygen (Solomon et al., 1982; Barth, 1992, 1995):

$$\begin{array}{}\text{(R2)}& {\displaystyle}\mathrm{N}{(}^{\mathrm{2}}\mathrm{D})+{\mathrm{O}}_{\mathrm{2}}\to \mathrm{NO}+\mathrm{O}\phantom{\rule{0.25em}{0ex}}.\end{array}$$

The dissociation energy of N_{2}
into ground state atoms N(^{4}S)
is about 9.8 eV
(*λ*≈127 nm) (Hendrie, 1954; Frost et al., 1956; Heays et al., 2017).
This energy together with the excitation energy to N(^{2}D)
is denoted by *h**ν* in Reaction (R1) and
can be provided by a number of sources,
most notably by auroral or photoelectrons
as well as by soft solar X-rays.

The NO content is reduced by photodissociation,

$$\begin{array}{}\text{(R3)}& {\displaystyle}\mathrm{NO}+h\mathit{\nu}\to \mathrm{N}+\mathrm{O}\phantom{\rule{1em}{0ex}}(\mathit{\lambda}<\mathrm{191}\phantom{\rule{0.125em}{0ex}}\mathrm{nm})\phantom{\rule{0.25em}{0ex}},\end{array}$$

by photoionization,

$$\begin{array}{}\text{(R4)}& {\displaystyle}\mathrm{NO}+h\mathit{\nu}\to {\mathrm{NO}}^{+}+{e}^{-}\phantom{\rule{1em}{0ex}}(\mathit{\lambda}<\mathrm{134}\phantom{\rule{0.125em}{0ex}}\mathrm{nm})\phantom{\rule{0.25em}{0ex}},\end{array}$$

and by reacting with atomic nitrogen,

$$\begin{array}{}\text{(R5)}& {\displaystyle}\mathrm{NO}+\mathrm{N}\to {\mathrm{N}}_{\mathrm{2}}+\mathrm{O}\phantom{\rule{0.25em}{0ex}}.\end{array}$$

N_{2}O has been retrieved in the mesosphere and thermosphere
from MIPAS (see, e.g. Funke et al., 2008b, a) and from
Scisat-1/ACE-FTS (Sheese et al., 2016).
Model–measurement studies by Semeniuk et al. (2008) attributed
the source of this N_{2}O
to being most likely the reaction
between NO_{2} and N atoms produced by
particle precipitation:

$$\begin{array}{}\text{(R6)}& {\displaystyle}\mathrm{N}+{\mathrm{NO}}_{\mathrm{2}}\to {\mathrm{N}}_{\mathrm{2}}\mathrm{O}+\mathrm{O}\phantom{\rule{0.25em}{0ex}}.\end{array}$$

We note that photo-excitation and photolysis at 185 nm (vacuum UV) of
NO or NO_{2} mixtures in nitrogen, N_{2}, or helium mixtures at
1 atm leads to N_{2}O formation (Maric and Burrows, 1992).
Both mechanisms explaining the production of N_{2}O involve excited states
of NO. Hence these pathways contribute to the loss of NO and
potentially an additional daytime source of N_{2}O in the upper atmosphere.
N_{2}O acts as an intermediate reservoir at high altitudes
(*⪆*90 km; see Sheese et al., 2016),
reacting with O(^{1}D) in two well-known channels
to N_{2} and O_{2} as well as to 2NO.
However, the largest N_{2}O abundances are located below 60 km
and originate primarily from the transport of tropospheric N_{2}O
into the stratosphere through the Brewer–Dobson
circulation (Funke et al., 2008a, b; Sheese et al., 2016)
but can reach up
to 70 km in geomagnetic storm conditions (Funke et al., 2008a; Sheese et al., 2016).
Both source and sink reactions indicate that
NO behaves differently in sunlit conditions than
in dark conditions.
NO is produced by particle precipitation at auroral latitudes,
but in dark conditions (without photolysis) it is only depleted
by reacting with atomic nitrogen (Reaction R5).
This asymmetry between production and depletion
in dark conditions results in different lifetimes
of NO.

Early work to parametrize NO in the lower thermosphere
(100–150 km) used SNOE measurements
from March 1998 to September 2000 (Marsh et al., 2004).
With these 2.5 years of data and using empirical orthogonal functions,
the so-called NOEM (Nitric Oxide Empirical Model) estimates
NO in the lower thermosphere as a function of the solar
*f*_{10.7 cm} radio flux, the solar declination angle, and
the planetary Kp index.
NOEM is still used as prior input for
NO retrieval, for example, from MIPAS (Bermejo-Pantaleón et al., 2011; Funke et al., 2012)
and SCIAMACHY (Bender et al., 2017b) spectra.
However, 2.5 years is relatively short compared to the 11-year
solar cycle, and the years 1998 to 2000 encompass a period of
elevated solar activity.
To address this, a longer time series from AIM/SOFIE was used to determine the
important drivers of NO in the lower thermosphere (90–140 km)
by Hendrickx et al. (2017).
Other recent work uses 10 years of NO data from Odin/SMR
from 85 to 115 km (Kiviranta et al., 2018).
Funke et al. (2016) derived a semi-empirical model of NO_{y}
in the stratosphere and mesosphere from MIPAS data.
Here we use Envisat/SCIAMACHY NO data from the nominal limb
mode (Bender et al., 2017b, a).
Apart from providing a similarly long time series of NO data,
the nominal Envisat/SCIAMACHY NO data cover the mesosphere
from 60 to 90 km (Bender et al., 2017b), bridging the gap between
the stratosphere and lower thermosphere models.

The paper is organized as follows: we present the data used in this work in Sect. 2. The two model variants, linear and non-linear, are described in Sect. 3. Details about the parameter and uncertainty estimation are explained in Sect. 4, and we present the results in Sect. 5. Finally we conclude our findings in Sect. 6.

2 Data

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We use the SCIAMACHY nitric oxide data set version 6.2.1 (Bender et al., 2017a) retrieved from the nominal limb scan mode (≈0–93 km). For a detailed instrument description, see Burrows et al. (1995) and Bovensmann et al. (1999), and for details of the retrieval algorithm, see Bender et al. (2013, 2017b).

The data were retrieved for the whole Envisat period (August 2002–April 2012). This satellite was orbiting in a sun-synchronous orbit at around 800 km altitude, with Equator crossing times of 10:00 and 22:00 local time. The NO number densities from the SCIAMACHY nominal mode were retrieved from the NO gamma band emissions. Since those emissions are fluorescent emissions excited by solar UV, SCIAMACHY NO data are only available for the 10:00 dayside (downleg) part of the orbit. Furthermore, the retrieval was carried out for altitudes from 60 to 160 km, but above approximately 90 km, the data reflect the scaled a priori densities from NOEM (Bender et al., 2017b). We therefore restrict the modelling to the mesosphere below 90 km.

We averaged the individual orbital data longitudinally on a daily basis
according to their geomagnetic latitude within 10^{∘} bins.
The geomagnetic latitude was determined according to the
eccentric dipole approximation of the
12th generation of the International Geomagnetic Reference Field
(IGRF12) (Thébault et al., 2015).
In the vertical direction the original retrieval
grid altitudes (2 km bins) were used.
Note that mesospheric NO concentrations are related to geomagnetically
as well as geographically based processes, but disentangling them is beyond the
scope of the paper.
Follow-up studies can build on the method presented here and study,
for example, longitudinally resolved time series.

The measurement sensitivity is taken into account via the averaging kernel diagonal elements, and days where its binned average was below 0.002 were excluded from the time series. Considering this criterion, each bin (geomagnetic latitude and altitude) contains about 3400 data points.

We use two proxies to model the NO number densities,
one accounting for the solar irradiance variations and
one accounting for the geomagnetic activity.
Various proxies have been used or proposed to account for the
solar-irradiance-induced variations in mesospheric–thermospheric NO,
which are in particular related to the 11-year solar cycle.
The NOEM (Nitric Oxide Empirical Model; Marsh et al., 2004) uses
the natural logarithm of the solar 10.7 cm radio flux *f*_{10.7}.
More recent work on AIM/SOFIE NO (Hendrickx et al., 2017)
uses the solar Lyman-*α* index
because some of the main production and loss processes are driven by UV photons.
Besides accounting for the long-term variation of NO with
solar activity, the Lyman-*α* index also includes short-term
UV variations and the associated NO production,
for example, caused by solar flares.
Barth et al. (1988) have shown that the Lyman-*α* index
directly relates to the observed NO
at low latitudes (30^{∘} S–30^{∘} N).
Thus we use it in this work as a proxy for NO.

In the same manner as for the irradiance variations, the “right” geomagnetic index to model particle-induced variations of NO is a matter of opinion. Kp is the oldest and most commonly used geomagnetic index; it was, for example, used in earlier work by Marsh et al. (2004) for modelling NO in the mesosphere and lower thermosphere. Kp is derived from magnetometer stations distributed at different latitudes and mostly in the Northern Hemisphere (NH). However, Hendrickx et al. (2015) found that the auroral electrojet index (AE) (Davis and Sugiura, 1966) correlated better with SOFIE-derived NO concentrations (Hendrickx et al., 2015, 2017; see also Sinnhuber et al., 2016). The AE index is derived from stations distributed almost evenly within the auroral latitude band. This distribution enables the AE index to be more closely related to the energy input into the atmosphere at these latitudes. Therefore, we use the auroral electrojet index (AE) as a proxy for geomagnetically induced NO. To account for the 10:00 satellite sampling, we average the hourly AE index from noon the day before to noon on the measurement day.

It should be noted that tests using Kp (or its linear equivalent, Ap) instead of AE
and using *f*_{10.7} instead of Lyman-*α*
suggested that the particular
choice of index did not lead to significantly different results.
Our choice of AE rather than Kp
and Lyman-*α* over *f*_{10.7}
is physically based and motivated
as described above.

3 Regression model

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We denote the number density by *x*_{NO}
as a function of
the (geomagnetic; see Sect. 2.1) latitude *ϕ*,
the altitude *z*,
and the time (measurement day) *t*:
${x}_{\mathrm{NO}}(\mathit{\varphi},z,t)$.
In the following we often drop the
subscript NO and combine the time direction
into a vector ** x**, with the

In the (multi-)linear case, we relate the nitric oxide
number densities ${x}_{\mathrm{NO}}(\mathit{\varphi},z,t)$ to the
two proxies, the solar Lyman-*α* index (Ly*α*(*t*)) and
the geomagnetic AE index (AE(*t*)).
Harmonic terms with
$\mathit{\omega}=\mathrm{2}\mathit{\pi}\phantom{\rule{0.125em}{0ex}}{\mathrm{a}}^{-\mathrm{1}}=\mathrm{2}\mathit{\pi}(\mathrm{365.25}\phantom{\rule{0.125em}{0ex}}\mathrm{d}{)}^{-\mathrm{1}}$
account for annual and semi-annual variations.
The linear model, including a constant offset for the background density,
describes the NO density according to Eq. (1):

$$\begin{array}{ll}{\displaystyle}{x}_{\mathrm{NO}}(\mathit{\varphi},z,t)& {\displaystyle}=a(\mathit{\varphi},z)+b(\mathit{\varphi},z)\cdot \mathrm{Ly}\mathit{\alpha}\left(t\right)+c(\mathit{\varphi},z)\cdot \mathrm{AE}\left(t\right)\\ {\displaystyle}& {\displaystyle}+\sum _{n=\mathrm{1}}^{\mathrm{2}}\left[{d}_{n}(\mathit{\varphi},z)\mathrm{cos}\left(n\mathit{\omega}t\right)\right.\\ \text{(1)}& {\displaystyle}& {\displaystyle}+{e}_{n}(\mathit{\varphi},z)\left.\mathrm{sin}\left(n\mathit{\omega}t\right)\right]\phantom{\rule{0.25em}{0ex}}.\end{array}$$

The linear model can be written in matrix form for
the *n* measurement times ${t}_{\mathrm{1}},\mathrm{\dots},{t}_{n}$ as Eq. (2),
with the parameter vector ** β** given by
${\mathit{\beta}}_{\mathrm{lin}}=(a,b,c,{d}_{\mathrm{1}},{e}_{\mathrm{1}},{d}_{\mathrm{2}},{e}_{\mathrm{2}}{)}^{\top}\in {\mathbb{R}}^{\mathrm{7}}$
and the model matrix $\mathbf{X}\in {\mathbb{R}}^{n\times \mathrm{7}}$.

$$\begin{array}{}\text{(2)}& \begin{array}{rl}{\displaystyle}{\mathit{x}}_{\mathrm{NO}}(\mathit{\varphi},z)& {\displaystyle}=\left(\begin{array}{ccccc}\mathrm{1}& \mathrm{Ly}\mathit{\alpha}\left({t}_{\mathrm{1}}\right)& \mathrm{AE}\left({t}_{\mathrm{1}}\right)& \mathrm{cos}\left(\mathit{\omega}{t}_{\mathrm{1}}\right)& \mathrm{sin}\left(\mathit{\omega}{t}_{\mathrm{1}}\right)\\ \mathrm{\vdots}\\ \mathrm{1}& \mathrm{Ly}\mathit{\alpha}\left({t}_{n}\right)& \mathrm{AE}\left({t}_{n}\right)& \mathrm{cos}\left(\mathit{\omega}{t}_{n}\right)& \mathrm{sin}\left(\mathit{\omega}{t}_{n}\right)\end{array}\right.\\ {\displaystyle}& {\displaystyle}\left.\begin{array}{cc}\mathrm{cos}\left(\mathrm{2}\mathit{\omega}{t}_{\mathrm{1}}\right)& \mathrm{sin}\left(\mathrm{2}\mathit{\omega}{t}_{\mathrm{1}}\right)\\ & \mathrm{\vdots}\\ \mathrm{cos}\left(\mathrm{2}\mathit{\omega}{t}_{n}\right)& \mathrm{sin}\left(\mathrm{2}\mathit{\omega}{t}_{n}\right)\end{array}\right)\cdot \left(\begin{array}{c}a\\ b\\ c\\ {d}_{\mathrm{1}}\\ {e}_{\mathrm{1}}\\ {d}_{\mathrm{2}}\\ {e}_{\mathrm{2}}\end{array}\right)\\ {\displaystyle}& {\displaystyle}=\mathbf{X}\cdot \mathit{\beta}\end{array}\end{array}$$

We determine the coefficients via least squares, minimizing the squared differences of the modelled number densities to the measured ones.

In contrast to the linear model above,
we modify the AE index by a finite lifetime *τ*, which
varies according to season; we denote this modified version by
$\stackrel{\mathrm{\u0303}}{\mathrm{AE}}$.
We then omit the harmonic parts in the model, and the non-linear
model is given by Eq. (3):

$$\begin{array}{}\text{(3)}& {x}_{\mathrm{NO}}(\mathit{\varphi},z,t)=a(\mathit{\varphi},z)+b(\mathit{\varphi},z)\cdot \mathrm{Ly}\mathit{\alpha}\left(t\right)+c(\mathit{\varphi},z)\cdot \stackrel{\mathrm{\u0303}}{\mathrm{AE}}\left(t\right)\phantom{\rule{0.25em}{0ex}}.\end{array}$$

Although this approach shifts all seasonal variations to the AE index and thus attributes them to particle-induced effects, we found that the residual traces of particle-unrelated seasonal effects were minor compared to the overall improvement of the fit. Additional harmonic terms only increase the number of free parameters without substantially improving the fit further.

The lifetime-corrected $\stackrel{\mathrm{\u0303}}{\mathrm{AE}}$ is given by the sum of the previous 60 days' AE values, each multiplied by an exponential decay factor:

$$\begin{array}{}\text{(4)}& \stackrel{\mathrm{\u0303}}{\mathrm{AE}}\left(t\right)=\sum _{{t}_{i}=\mathrm{0}}^{\mathrm{60}\phantom{\rule{0.125em}{0ex}}\mathrm{d}}\mathrm{AE}(t-{t}_{i})\cdot \mathrm{exp}\left\{-{\displaystyle \frac{{t}_{i}}{\mathit{\tau}}}\right\}\phantom{\rule{0.25em}{0ex}}.\end{array}$$

The total lifetime *τ* is given by a constant part *τ*_{0} plus
the non-negative fraction of a seasonally
varying part *τ*_{t}:

$$\begin{array}{}\text{(5)}& {\displaystyle}\mathit{\tau}& {\displaystyle}={\mathit{\tau}}_{\mathrm{0}}+\left\{\begin{array}{ll}{\mathit{\tau}}_{t}\phantom{\rule{0.25em}{0ex}},& {\mathit{\tau}}_{t}\ge \mathrm{0}\\ \mathrm{0}\phantom{\rule{0.25em}{0ex}},& {\mathit{\tau}}_{t}<\mathrm{0}\end{array}\right.\phantom{\rule{0.25em}{0ex}},\text{(6)}& {\displaystyle}{\mathit{\tau}}_{t}& {\displaystyle}=d\mathrm{cos}\left(\mathit{\omega}t\right)+e\mathrm{sin}\left(\mathit{\omega}t\right)\phantom{\rule{0.25em}{0ex}},\end{array}$$

where *τ*_{t} accounts for
the different lifetime during winter and summer.
The parameter vector for this model is given by
${\mathit{\beta}}_{\mathrm{nonlin}}=(a,b,c,{\mathit{\tau}}_{\mathrm{0}},d,e{)}^{\top}\in {\mathbb{R}}^{\mathrm{6}}$,
and we describe how we determine these coefficients and their
uncertainties in the next section.

4 Parameter and uncertainty estimation

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The parameters are usually estimated by maximizing the likelihood, or, in the case of additional prior constraints, by maximizing the posterior probability. In the linear case and in the case of independently identically distributed Gaussian measurement uncertainties, the maximum likelihood solutions are given by the usual linear least squares solutions. Estimating the parameters in the non-linear case is more involved. Various methods exist, for example, conjugate gradient, random (Monte Carlo) sampling, or exhaustive search methods. The assessment and selection of the method to estimate the parameters in the non-linear case are given below.

Because of the complicated structure of the model function in Eq. (3), in particular the lifetime parts in Eqs. (5) and (6), the usual gradient methods converge slowly, if at all. Therefore, we fit the parameters and assess their uncertainty ranges using Markov chain Monte Carlo (MCMC) sampling (Foreman-Mackey et al., 2013). This method samples probability distributions, and we apply it to sample the parameter space, putting emphasis on parameter values with a high posterior probability. The posterior distribution is given in the Bayesian sense as the product of the likelihood and the prior distribution:

$$\begin{array}{}\text{(7)}& p\left({\mathit{x}}_{\mathrm{mod}}\right|\mathit{y})\propto p({\mathit{x}}_{\mathrm{mod}}|\mathit{y},\mathit{\beta})p\left(\mathit{\beta}\right)\phantom{\rule{0.25em}{0ex}}.\end{array}$$

We denote the vector of the measured densities by ** y**
and the modelled densities by

The likelihood $p\left({\mathit{x}}_{\mathrm{mod}}\right|\mathit{y},\mathit{\beta})$ is in our case given by a Gaussian distribution of the residuals, the difference of the model to the data, given in Eq. (8):

$$\begin{array}{ll}{\displaystyle}p\left({\mathit{x}}_{\mathrm{mod}}\right|\mathit{y},\mathit{\beta})& {\displaystyle}=\mathcal{N}\left(\mathit{y},{\mathbf{S}}_{y}\right)\\ {\displaystyle}& {\displaystyle}=C\mathrm{exp}\left\{-{\displaystyle \frac{\mathrm{1}}{\mathrm{2}}}{\left(\mathit{y}-{\mathit{x}}_{\mathrm{mod}}\left(\mathit{\beta}\right)\right)}^{\top}\right.\\ \text{(8)}& {\displaystyle}& {\displaystyle}\left.{\mathbf{S}}_{y}^{-\mathrm{1}}\left(\mathit{y}-{\mathit{x}}_{\mathrm{mod}}\left(\mathit{\beta}\right)\right)\right\}.\end{array}$$

Note that the normalization constant *C* in Eq. (8)
does not influence the value of the maximal
likelihood.
The covariance matrix **S**_{y} contains the squared standard errors
of the daily zonal means on the diagonal,
${\mathbf{S}}_{y}=\mathrm{diag}\left({\mathit{\sigma}}_{y}^{\mathrm{2}}\right)$.

The prior distribution *p*(** β**) restricts the parameters
to lie within certain ranges, and
the bounds we used for the sampling are listed in
Table 1.
Within those bounds
we assume uniform (flat) prior distributions
for the offset, the geomagnetic and solar amplitudes, and in the
linear case also for the annual and semi-annual harmonics.
We penalize large lifetimes using an
exponential distribution $p\left(\mathit{\tau}\right)\propto \mathrm{exp}\mathit{\{}-\mathit{\tau}/{\mathit{\sigma}}_{\mathit{\tau}}\mathit{\}}$
for each lifetime parameter, i.e. for

In the simple case, the measurement covariance matrix **S**_{y}
contains the measurement uncertainties on the diagonal,
in our case the (squared) standard error of the zonal means
denoted by *σ*_{y},
${\mathbf{S}}_{y}=\mathrm{diag}\left({\mathit{\sigma}}_{y}^{\mathrm{2}}\right)$.
However, the standard error of the mean
might underestimate the true uncertainties.
In addition, possible correlations may occur which
are not accounted for using a diagonal **S**_{y}.

Both problems can be addressed by adding a
covariance kernel **K** to **S**_{y}.
Various forms of covariance kernels can be
used (Rasmussen and Williams, 2006),
depending on the underlying process leading to the
measurement or residual uncertainties.
Since we have no prior knowledge about the true correlations,
we use a commonly chosen
kernel of the Matérn 3/2
type (Matérn, 1960; MacKay, 2003; Rasmussen and Williams, 2006).
This kernel only depends on the (time) distance between
the measurements ${t}_{ij}=|{t}_{i}-{t}_{j}|$
and has two parameters, the “strength” *σ*
and correlation length *ρ*:

$$\begin{array}{}\text{(9)}& {K}_{ij}={\mathit{\sigma}}^{\mathrm{2}}\left(\mathrm{1}+{\displaystyle \frac{\sqrt{\mathrm{3}}\phantom{\rule{0.125em}{0ex}}{t}_{ij}}{\mathit{\rho}}}\right)\mathrm{exp}\left\{-{\displaystyle \frac{\sqrt{\mathrm{3}}\phantom{\rule{0.125em}{0ex}}{t}_{ij}}{\mathit{\rho}}}\right\}\phantom{\rule{0.25em}{0ex}}.\end{array}$$

Both parameters are estimated together with the model
parameter vector ** β**.
We found that using the kernel (9)
in a covariance matrix

$$\begin{array}{}\text{(10)}& {{S}_{y}}_{ij}={K}_{ij}+{\mathit{\delta}}_{ij}{{\mathit{\sigma}}_{y}}_{i}^{\mathrm{2}}\phantom{\rule{0.25em}{0ex}}\end{array}$$

worked best and led to stable and reliable parameter sampling.
Note that an additional “white noise” term
*σ*^{2}**I** could be added to
the covariance matrix to account for data uncertainties that are still
underestimated.
However, this additional white noise term did not
improve the convergence, nor did it influence the fitted
parameters significantly.

The approximately 3000×3000 covariance matrix
of the Gaussian process model for the residuals was
evaluated using the Foreman-Mackey et al. (2017a) approximation
and the provided Python code (Foreman-Mackey et al., 2017b).
For one-dimensional data sets, this approach is computationally
faster than the full Cholesky decomposition, which is usually used to invert the covariance matrix **S**_{y}.
With this approximation, we achieved sensible Monte Carlo
sampling times to facilitate evaluating all 18×16
latitude × altitude bins on a small cluster in about 1 day.
We used the `emcee`

package (Foreman-Mackey et al., 2013) for the Monte Carlo sampling,
set up to use
112 walkers and 800 samples for the initial fit of the parameters,
followed by another 800 so-called burn-in samples and 1400 production
samples.
The full code can be found in Bender (2018a).

5 Results

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We demonstrate the parameter estimates using example time series
*x*_{NO} at 70 km at 65^{∘} S, 5^{∘} N, and 65^{∘} N.
NO shows different behaviour in these regions,
showing the most variation with respect to
the solar cycle and geomagnetic activity at high latitudes.
In contrast, at low latitudes the geomagnetic influence should be
reduced (Barth et al., 1988; Hendrickx et al., 2017; Kiviranta et al., 2018).
We briefly only show the results for the linear model and point out
some of its shortcomings.
Thereafter we show the results from the non-linear model and
continue to use that for further analysis of the coefficients.

The fitted densities of the linear model Eq. (1)
compared to the data are shown in Fig. 1a, b, and c
for the three example latitude bins (65^{∘} S, 5^{∘} N, 65^{∘} N) at 70 km.
The linear model works well at high southern and low latitudes.
At high northern latitudes and to a lesser extent at high southern latitudes,
the linear model captures the summer NO variations well.
However, the model underestimates the high values in the polar winter
at active times (2004–2007) and overestimates the low winter values
at quiet times (2009–2011).

For the sample time series (65^{∘} S, 5^{∘} N, 65^{∘} N at 70 km),
the fits using the non-linear model Eq. (3)
are shown in Fig. 2a, b, and c.
The non-linear model better captures both the summer NO variations as
well as the high values in the winter, especially at high northern latitudes.
However, at times of high solar activity (2003–2006) and
in particular at times of a strongly disturbed mesosphere (2004, 2006, 2012),
the residuals are still significant.
At high southern and low latitudes, the improvement over the linear model is
less evident.
At low latitudes, the NO content is apparently mostly related
to the 11-year solar cycle, and the particle influence is
suppressed.
Since this cycle is covered by the Lyman-*α* index,
both models perform similarly, but the non-linear version
has one less parameter.
In both regions the residuals show traces of seasonal variations
that are not related to particle effects.
The linear model appears to capture these variations better than the non-linear model.
However, by objective measures including the number of model parameters^{1},
the non-linear version fits the data better in all bins (not shown here).
At high southern latitudes, the SCIAMACHY data are less
densely sampled compared to high northern latitudes
(see Bender et al., 2017b).
In addition to the sampling differences, geomagnetic latitudes encompass
a wider geographic range in the Southern Hemisphere (SH)
than in the Northern Hemisphere (NH), and the AE index is derived from stations in the NH.
Both effects can lower the NO concentrations that SCIAMACHY
observes in the SH, particularly at the winter maxima.
The lifetime variation that improves the fit in the NH
is thus less effective in the SH.

Using the non-linear model, we show the latitude–altitude
distributions of the medians of the sampled
Lyman-*α* and geomagnetic
index coefficients in Fig. 3.
The white regions indicate
values outside of the 95 % confidence region
or whose sampled distribution has a skewness larger than 0.33.
The MCMC method samples the parameter probability
distributions. Since we require the geomagnetic index
and constant lifetime parameters to be larger than zero (see Table 1),
these sampled distributions are sometimes skewed towards zero, even though
the 95 % credible region is still larger than zero.
Excluding heavily skewed distributions avoids those cases
because the
“true” parameter is apparently zero.

The Lyman-*α* parameter distribution shows that its
largest influence is at middle and low latitudes between
65 and 80 km.
Another increase of the Lyman-*α*
coefficient is indicated at higher altitudes above 90 km.
The penetration of Lyman-*α* radiation decreases with
decreasing altitude as a result of scattering and absorption
by air molecules.
On the other hand, the concentration of air decreases with altitude.
At this stage we do not have an unambiguous explanation of this behaviour,
but it may be related to reaction pathways as laid out
by Pendleton et al. (1983), which would relate the NO concentrations to the CO_{2}
and H_{2}O (or OH, respectively) profiles.
The Lyman-*α* coefficients are all negative below 65 km.
We also observe negative values at high northern
latitude at all altitudes and at high southern latitudes
above 85 km.
These negative coefficients indicate that
NO photodissociation or conversion to other
species outweighs its production via UV radiation in those places.
The north–south asymmetry may be related to sampling
and the difference in illumination with respect to
geomagnetic latitudes; see Sect. 5.1.

The geomagnetic influence is largest at high latitudes
between 50 and 75^{∘} above about 65 km.
The AE coefficients peak at around 72 km and indicate
a further increase above 90 km.
This pattern of the geomagnetic influence matches
the one found in Sinnhuber et al. (2016).
Unfortunately both increased influences above 90 km
in Lyman-*α* and AE
cannot be studied at higher latitudes due to a large a priori contribution
to the data.

The latitude–altitude distributions of the lifetime parameters are shown in Fig. 4. All values shown are within the 95 % confidence region. As for the coefficients above, we also exclude regions where the skewness was larger than 0.33.

The constant part of the lifetime, *τ*_{0}, is below
2 days in most bins, except for exceptionally large
values (>10 days) at low latitudes (0–20^{∘} N) between 68 and 74 km.
Although we constrained the lifetime with an exponential
prior distribution, these large values apparently resulted
in a better fit to the data.
One explanation could be that because of the small geomagnetic
influence (the AE coefficient is small in this region),
the lifetime is more or less irrelevant.
The amplitude of the annual variation
($\left|{\mathit{\tau}}_{\mathrm{t}}\right|=\sqrt{{\mathit{\tau}}_{\mathrm{cos}}^{\mathrm{2}}+{\mathit{\tau}}_{\mathrm{sin}}^{\mathrm{2}}}=\sqrt{{d}^{\mathrm{2}}+{e}^{\mathrm{2}}}$; see Eq. 6)
is largest at high latitudes in the Northern Hemisphere
and at middle latitudes in the Southern Hemisphere.
This difference could be linked to the geomagnetic latitudes
which include a wider range of geographic latitudes in the Southern
Hemisphere compared to the Northern Hemisphere.
Therefore, the annual variation is less apparent in the Southern Hemisphere.
The amplitude also increases with decreasing altitude below 75 km
at middle and high latitudes
and with increasing altitude above that.
The increasing annual variation at low altitudes
can be the result of transport processes that
are not explicitly treated in our approach.
Note that the term *lifetime* is not
a pure (photo)chemical lifetime; rather it indicates
how long the AE signal persists in the NO densities.
In that sense it combines the
(photo)chemical lifetime with transport effects
as discussed in Sinnhuber et al. (2016).

For three selected latitude bins in the Northern Hemisphere
(5, 35, and 65^{∘} N)
we present profiles of the fitted parameters in Fig. 5.
The solid line indicates the median, and
the error bars indicate the 95 % confidence region.
As indicated in Fig. 3, the solar radiation
influence is largest between 65 and 80 km.
Its influence is also up to a factor of 2
larger at low and middle latitudes compared to high latitudes,
where the coefficient only differs significantly from zero
below 65 and above 82 km.
Similarly, the geomagnetic impact decreases with decreasing latitude by
1 order of magnitude from high to middle latitudes and at least
a further factor of 5 to lower latitudes.
The largest impact is around 70–72 km and possibly above 90 km
at high latitudes and is approximately constant between 66 and
76 km at middle and low latitudes.
Note that the scale in Fig. 5b
is logarithmic.
The lifetime variation shows that at high latitudes,
geomagnetically affected NO persists longer during winter (the phase is close to zero for all altitudes at 65^{∘} N,
not shown here).
It persists up to 10 days longer between 85 and 70 km
and increasingly longer below, reaching 28 days at 60 km.

For the same latitude bins in the Southern Hemisphere (5, 35, and 65^{∘} S) we present profiles of the fitted parameters in
Fig. 6. Similar to the coefficients in the Northern
Hemisphere (see Fig. 5), the solar radiation influence is
largest between 65 and 80 km and also up to a factor of 2 larger at
low and middle latitudes compared to high latitudes. However, the
Lyman-*α* coefficients at 65^{∘} S are significant below 82 km. Also
the geomagnetic AE coefficients show a similar pattern in the Southern
Hemisphere compared to the Northern Hemisphere, decreasing by orders of
magnitude from high to low latitudes. Note that the AE coefficients at high
latitudes are slightly lower than in the Northern Hemisphere, whereas the
coefficients at middle and low latitudes are slightly larger. This slight
asymmetry was also found in the study by Sinnhuber et al. (2016) and may be
related to AE being derived solely from stations in the Northern
Hemisphere (Mandea and Korte, 2011). With respect to latitude, the annual variation
of the lifetime seems to be reversed compared to the Northern Hemisphere,
with almost no variation at high latitudes and longer persisting NO at
low latitudes. A faster descent in the southern polar vortex may be
responsible for the short lifetime at high southern latitudes. Another reason
may be the mixture of air from the inside and outside of the polar vertex when
averaging along geomagnetic latitudes since the 65^{∘} S geomagnetic
latitude band includes geographic locations from about 45 to
85^{∘} S. A third possibility may be the exclusion of the South
Atlantic Anomaly from the retrieval (Bender et al., 2013, 2017b), for which presumably the particle-induced impact on NO is largest.

The distribution of the parameters confirms our understanding
of the processes producing NO in the mesosphere to a large extent. The Lyman-*α* coefficients are related to
radiative processes such as production by
UV or soft X-rays, either directly or via intermediary
of photoelectrons. The photons are not influenced by Earth's
magnetic field, and the influence of these processes is largest
at low latitudes and decreases towards higher latitudes.
We observe negative Lyman-*α* coefficients
below 65 km at all latitudes and at high
northern latitudes above 80 km.
These negative Lyman-*α* coefficients
indicate that at high solar activity,
photodissociation by *λ*<191 nm photons,
photoionization by *λ*<134 nm photons,
or collisional loss and conversion to other species
outweigh the production from higher energy photons (<40 nm).
At high southern latitudes these negative Lyman-*α*
coefficients are not as pronounced as at high northern latitudes.
As mentioned in Sect. 5.2, this north–south
asymmetry may be related to sampling
and the difference in illumination with respect to
geomagnetic latitudes; see also Sect. 5.1.

The AE coefficients are largest at auroral latitudes, as
expected for the particle nature of the associated NO production.
The AE coefficient can be considered an effective production rate
modulated by all short-term (≪1 day) processes.
To roughly estimate this production rate, we divided the
coefficient of the (daily) AE by 86 400 s, which follows
the approach in Sinnhuber et al. (2016).
We find a maximum production rate of about
1 cm^{−3} nT^{−1} s^{−1} around 70–72 km.
This production rate also agrees with the one estimated
by Sinnhuber et al. (2016) through a superposed epoch analysis
of summertime NO.
Comparing the NO production to the ionization rates
from Verronen et al. (2013) from 1 to 3 January 2005
(assuming approximately 1 NO molecule per ion pair), our
model overestimates the ionization derived from AE on these days.
The AE values of 105, 355, and 435 nT translate
to 105, 355, and 435 NO molecules cm^{−3} s^{−1}, about 4 times
larger than would be estimated from the ionization rates in Verronen et al. (2013), but
agreeing with Sinnhuber et al. (2016).
The factor of 4 may be related to the slightly different locations,
around 60^{∘} N (Verronen et al., 2013) compared to around 65^{∘} N
here and in Sinnhuber et al. (2016), in which the ionization rates may be higher.

The associated constant part *τ*_{0} of the lifetime ranges
from around 1 to around 4 days, except for large *τ*_{0} at
low latitudes around 70 km.
As already discussed in Sect. 5.2,
these large lifetimes may be a
side effect of the small geomagnetic coefficients and more
or less arbitrary.
The magnitude is similar to what was found in the
study by Sinnhuber et al. (2016) using only the summer data.

The annual variation of the lifetime is largest at high northern latitudes with a nearly constant amplitude of 10 days between 70 and 85 km. An empirical lifetime of 10 days in winter was used by Sinnhuber et al. (2016) to extend the NO predicted by the summer analysis to the larger values in winter. Here we could confirm that 10 days is a good approximation of the NO lifetime in winter, but it varies with altitude. The altitude distribution agrees with the increasing photochemical lifetime at large solar zenith angles (Sinnhuber et al., 2016, Fig. 7b). The larger values in our study are similarly related to transport and mixing effects which alter the observed lifetime. The small variation of the lifetime at high southern latitudes could be a sampling issue because SCIAMACHY only observes small variations there in winter (see Figs. 1 and 2). Note that the results (in particular the large annual variation) in the northernmost latitude bin should be taken with caution because this bin is sparsely sampled by SCIAMACHY, and the large winter NO concentrations are actually absent from the data.

6 Conclusions

Back to toptop
We propose an empirical model to estimate the NO density in the
mesosphere (60–90 km) derived from measurements from SCIAMACHY nominal-mode limb scans. Our model calculates NO number densities for
geomagnetic latitudes using the solar Lyman-*α* index and the
geomagnetic AE index. Two approaches were tested, a linear approach
containing annual and semi-annual harmonics and a non-linear version using a
finite and variable lifetime for the geomagnetically induced variations. From
our proposed models, the linear variant only describes part of the NO
variations. It can describe the summer variations but underestimates the
large number densities during winter. The non-linear version derived from
the SCIAMACHY NO data describes both variations using an annually
varying finite lifetime for the particle-induced NO. However, in cases
of dynamic disturbances of the mesosphere, for example, in early 2004 or in
early 2006, the indirectly enhanced NO (see, for
example, Randall et al., 2007) is not captured by the model. These remaining
variations are treated as statistical noise.

Sinnhuber et al. (2016) use a superposed epoch analysis limited to the polar summer to model the NO data. Here we extend that analysis to use all available SCIAMACHY nominal-mode NO data for all seasons. However, during summer the present results show comparable NO production per AE unit and similar lifetimes to the Sinnhuber et al. (2016) study.

The parameter distributions indicate in which regions the different processes
are significant.
We find that these distributions match our current understanding of
the processes producing and depleting NO in the
mesosphere (Funke et al., 2014a, b, 2016; Sinnhuber et al., 2016; Hendrickx et al., 2017; Kiviranta et al., 2018).
In particular, the influence of Lyman-*α*
(or solar UV radiation in general) is largest at low and middle latitudes,
which is explained by the direct production of NO via solar UV
or soft X-ray radiation (Barth et al., 1988, 2003).
The geomagnetic influence is largest at high latitudes and is best explained by the
production from charged particles that enter the atmosphere
in the polar regions along the magnetic field.

A potential improvement would be to use actual measurements of precipitating particles instead of the AE index. Using measured fluxes could help to confirm our current understanding of how those fluxes relate to ionization (Turunen et al., 2009; Verronen et al., 2013) and subsequent NO production (Sinnhuber et al., 2016). Furthermore, including dynamical transport, as for example in Funke et al. (2016), could improve our knowledge of the combined direct and indirect NO production in the mesosphere.

Code and data availability

Back to toptop
Code and data availability.

The SCIAMACHY NO data set used in this study
is available at https://doi.org/10.5281/zenodo.804371
(Bender et al., 2017a). The Python code to prepare the data (daily zonal
averaging) and to perform the analysis is available at
https://doi.org/10.5281/zenodo.1401370 (Bender, 2018a). The daily zonal
mean NO data and the sampled parameter distributions
are available at
https://doi.org/10.5281/zenodo.1342701 (Bender, 2018b).
The solar Lyman-*α* index data were downloaded from
http://lasp.colorado.edu/lisird/data/composite_lyman_alpha/ (last access: 19 December 2017),
the AE index data were downloaded from http://wdc.kugi.kyoto-u.ac.jp/aedir/ (last access: 13 February 2019),
and the daily mean values used in this study are available within the
aforementioned data set.

Author contributions

Back to toptop
Author contributions.

SB developed the model, prepared and performed the data analysis, and set up the paper. MS provided input on the model and the idea of a variable NO lifetime. JPB and PJE contributed to the discussion and use of language. All authors contributed to the interpretation and discussion of the method and the results as well as to the writing of the paper.

Competing interests

Back to toptop
Competing interests.

The authors declare that they have no conflict of interest.

Acknowledgements

Back to toptop
Acknowledgements.

Stefan Bender and Miriam Sinnhuber thank the Helmholtz Association for funding part of this project
under grant number VH-NG-624.
Stefan Bender and Patrick J. Espy acknowledge support from the Birkeland Center
for Space Sciences (BCSS), supported by the Research Council of
Norway under grant number 223252/F50.
The SCIAMACHY project was a national contribution to ESA Envisat,
funded by German Aerospace (DLR),
the Dutch Space Agency, SNO, and the Belgium Federal Science Policy Office, BELSPO.
The University of Bremen as principal investigator has led the scientific
support and development of the SCIAMACHY instrument as well as the scientific exploitation of its
data products.
This work was performed on the Abel Cluster,
owned by the University of Oslo and Uninett/Sigma2,
and operated by the Department for Research Computing at USIT,
the University of Oslo IT department (https://www.hpc.uio.no/;
last access: 13 February 2019).

Edited by: Franz-Josef Lübken

Reviewed by: two anonymous referees

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Past and recent research in model selection provides a number of choices on how to compare models objectively. The results are so-called information criteria which aim to provide a consistent way of how to compare models, most notably the “Akaike information criterion” (AIC; Akaike, 1974), the “Bayesian information criterion” or “Schwarz criterion” (BIC or SIC; Schwarz, 1978), the “deviance information criterion” (DIC; Spiegelhalter et al., 2002; Ando, 2011), or the “widely applicable information criterion” (WAIC; Watanabe, 2010; Vehtari et al., 2016). Alternatively, the “standardized mean squared error” (SMSE) or the “mean standardized log loss” (MSLL) (Rasmussen and Williams, 2006, chap. 2) gives an impression of the quality of regression models with respect to each other.

Short summary

We present an empirical model for nitric oxide (NO) in the mesosphere (60–90 km) derived from SCIAMACHY limb scan data. Our model relates the daily (longitudinally) averaged NO number densities from SCIAMACHY as a function of geomagnetic latitude to the solar Lyman-alpha and the geomagnetic AE indices. We use a non-linear regression model, incorporating a finite and seasonally varying lifetime for the geomagnetically induced NO.

We present an empirical model for nitric oxide (NO) in the mesosphere (60–90 km) derived from...

Atmospheric Chemistry and Physics

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