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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>GÃ¶ttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acp-9-4031-2009</article-id>
<title-group>
<article-title>Ammonia in positively charged pre-nucleation clusters: a quantum-chemical study and atmospheric implications</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nadykto</surname>
<given-names>A. B.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Yu</surname>
<given-names>F.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Herb</surname>
<given-names>J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Atmospheric Sciences Research Center, State University of New York at Albany, 251 Fuller Rd., Albany, NY 12203, USA</addr-line>
</aff>
<pub-date pub-type="epub">
<day>18</day>
<month>06</month>
<year>2009</year>
</pub-date>
<volume>9</volume>
<issue>12</issue>
<fpage>4031</fpage>
<lpage>4038</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
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<abstract>
<p>The quantum-chemical treatment of pre-nucleation clusters consisting of
atmospheric nucleation precursors is critically important for the
understanding of the molecular nature of atmospheric nucleation. In the
present study, the influence of ammonia on the thermochemical stability of
positively charged pre-nucleation clusters has been studied using the
Density Functional Theory (DFT). The formation of binary
(NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt; and ternary
(NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt; ionic clusters and the
conversion of (H&lt;sub&gt;3&lt;/sub&gt;O&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&amp;minus;1&lt;/sub&gt; into (NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt;
and (H&lt;sub&gt;3&lt;/sub&gt;O&lt;sup&gt;+&lt;/sup&gt;) (H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&amp;minus;1&lt;/sub&gt; into
(NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt; have been investigated.
The thermochemical analysis carried out in the present study shows both
(H&lt;sub&gt;3&lt;/sub&gt;O&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&amp;minus;1&lt;/sub&gt;â†’(NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;) (H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt; and
(H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;)(H&lt;sub&gt;3&lt;/sub&gt;O&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&amp;minus;1&lt;/sub&gt;â†’(NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;) (H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt;
transformations to be
favorable thermodynamically and gives us a clear indication of the important
role of ammonia in the conversion of positively charged clusters containing
hydronium (H&lt;sub&gt;3&lt;/sub&gt;O&lt;sup&gt;+&lt;/sup&gt;) into those containing protonated ammonia. Under
typical continental boundary layer condition, a large fraction of small
positive ions may contain ammonia, but most of neutral and negative hydrated
sulfuric acid monomers do not contain ammonia. In term of absolute
concentrations, around 1000 cm&lt;sup&gt;&amp;minus;3&lt;/sup&gt; out of 10&lt;sup&gt;7&lt;/sup&gt; cm&lt;sup&gt;&amp;minus;3&lt;/sup&gt; of sulfuric
acid momoners contain ammonia. (NH&lt;sub&gt;4&lt;/sub&gt;)&lt;sup&gt;+&lt;/sup&gt;(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt; clusters
appear to dominate the concentrations of small positive ions. Because of the
weak affinity of sulfuric acid molecules to (H&lt;sub&gt;3&lt;/sub&gt;O&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt;
and (NH&lt;sub&gt;4&lt;/sub&gt;&lt;sup&gt;+&lt;/sup&gt;)(H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;&lt;i&gt;n&lt;/i&gt;&lt;/sub&gt; ions (&lt;i&gt;n&lt;/i&gt;&amp;le;6), the concentrations
of both ammoniated and un-ammoniated sulfuric acid water proton clusters are
quite low. The atmospheric implications of the obtained results are
discussed.</p>
</abstract>
<counts><page-count count="8"/></counts>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple"> % vor jede Referenz Ball, S. M., Hanson, D. R., Eisele, F. L., and McMurry, P. H.: Laboratory studies of particle nucleation: Initial results for H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;, H&lt;sub&gt;2&lt;/sub&gt;O, and NH&lt;sub&gt;3&lt;/sub&gt; vapors, J. Geophys. Res., 104, 23709â€“23718, 1999. </mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple"> Christensen, P. S., Wedel, S., and Livbjerg, H.: The kinetics of the photolytic production of aerosols from SO&lt;sub&gt;2&lt;/sub&gt; and NH&lt;sub&gt;3&lt;/sub&gt; in humid air, Chem. Eng. Sci., 49, 4605â€“4614, 1994. </mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple"> Ding, C.-G., Laasonen, K., and Laaksonen, A.: Two sulfuric acids in small water clusters, J. Phys. Chem. A., 107(41), 8648â€“8662, 2003. </mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple"> Froyd, K. D. and Lovejoy, E. R.: Experimental thermodynamics of cluster ions composed of H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt; and H&lt;sub&gt;2&lt;/sub&gt;O. 1. Positive ions, J. Phys. Chem. A, 107, 9800â€“9811, 2003. </mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple"> Hirsikko, A., Bergman, T., Laakso, L., Dal Maso, M., Riipinen, I., HÃ±rrak, U., and Kulmala, M.: Identification and classification of the formation of intermediate ions measured in boreal forest, Atmos. Chem. Phys., 7, 201â€“210, 2007. </mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple"> Jiang, J. C.: Ab initio studies of NH$_4^+$(H&lt;sub&gt;2&lt;/sub&gt;O)$_1-5$ and the influence of hydrogen-bonding nonadditivity on geometries and vibrations, J. Phys. Chem. A, 103, 3123â€“3136, 1999. </mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple"> Kim, T. O., Ishida, T., Adachi, M., Okuyama, K., and Seinfeld, J. H.: Nanometer-Sized Particle Formation from NH&lt;sub&gt;3&lt;/sub&gt;/SO&lt;sub&gt;2&lt;/sub&gt;/H&lt;sub&gt;2&lt;/sub&gt;O/Air Mixtures by Ionizing Irradiation, Aerosol Sci. Tech., 29, 112â€“125, 1998. </mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple"> Kulmala, M., Vehkamaki, H., Petaja, T., Dal Maso, M., Lauri, A., Kerminen, V.-M., Birmili, W., and McMurry, P. H.: Formation and growth rates of ultrafine atmospheric particles: A review of observations, J. Aerosol Sci., 35, 143â€“176, 2004. </mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple"> Kurteìn, T., Sundberg, M. R., VehkamÃ¤ki, H., Noppel, M., Blomqvist, J., and Kulmala, M.: Ab initio and density functional theory reinvestigation of gas-phase sulfuric acid monohydrate and ammonium hydrogen sulfate, J. Phys. Chem. A, 110, 7178â€“7188, 2006. </mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple"> KurtÃ©n, T., Torpo, L., Sundberg, M. R., Kerminen, V.-M., VehkamÃ¤ki, H., and Kulmala, M.: Estimating the NH&lt;sub&gt;3&lt;/sub&gt;:H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt; ratio of nucleating clusters in atmospheric conditions using quantum chemical methods, Atmos. Chem. Phys., 7, 2765â€“2773, 2007a. </mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple"> Kurteìn, T., Torpo, L., Ding, C.-G., VehkamÃ¤ki, H., Sundberg, M. R., Laasonen, K., and Kulmala, M.: A density functional study on water-sulfuric acid-ammonia clusters and implications for atmospheric cluster formation, J. Geophys. Res., 112(D4), D04210, doi:10.1029/2006JD007391, 2007b. </mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple"> Kurteìn, T., Noppel, M., VehkamÃ¤ki, H., Salonen, M., and Kulmala, M.: Quantum chemical studies of hydrate formation of H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt; and HSO$_4^-$, Boreal Environ. Res., 12, 431â€“453, 2007c. </mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple"> Lewandowski, H., Koglin, E., and Meier, R. J.: Computational study of the infrared spectrum of acetic acid, its cyclic dimer, and its methyl ester, Vib. Spectrosc., 39, 15â€“22, 2005. </mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple"> Lovejoy, E. R., Curtius, J., and Froyd, K. D.: Atmospheric ion-induced nucleation of sulfuric acid and water, J. Geophys. Res., 109, D08204, doi:10.1029/2003JD004460, 2004. </mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple"> Merikanto, J., I. Napari, H. VehkamÃ¤ki, T. Anttila, M. Kulmala: New parameterization of sulfuric acid-ammonia-water ternary nucleation rates at tropospheric conditions, J. Geophys. Res. 112, D15207, doi:10.1029/2006JD007977, 2007. </mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple"> MÃ¼ller, A., Losada, M., and Leutwyler, S.: Ab initio benchmark study of (2-pyridone)2, a strongly bound doubly hydrogen-bonded dimer, J. Phys. Chem. A, 108(1), 157â€“165, 2004. </mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple"> Nadykto, A. B., Al Natsheh, A., Yu, F., Mikkelsen, K. V., and Ruuskanen, J.: Quantum nature of the sign preference in ion-induced nucleation, Phys. Rev. Lett., 96(12), 125701, doi:10.1103/PhysRevLett.96.125701, 2006. </mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple"> Nadykto, A. B. and Yu, F.: Strong hydrogen bonding between atmospheric nucleation precursors and common organics, Chem. Phys. Lett., 435, 14â€“18, 2007. </mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple"> Nadykto, A. B., Al Natsheh, A., Yu, F., Mikkelsen, K. V., and Herb, J.: Computational quantum chemistry: A new approach to atmospheric nucleation, Adv. Quantum Chem., 55, 449â€“478, 2008a. </mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple"> Nadykto, A. B., Yu, F., and Herb, J.: Effect of ammonia on the gas-phase hydration of common atmospheric ion HSO$_4^-$, Int. J. Mol. Sci., 9(11), 2184â€“2193, doi:10.3390/ijms9112184, 2008b. </mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple"> Nadykto, A. B., Yu, F., and Herb, J.: Theoretical analysis of the gas-phase hydration of common atmospheric pre-nucleation (HSO$_4^-)$(H&lt;sub&gt;2&lt;/sub&gt;O)$_n$ and (H&lt;sub&gt;3&lt;/sub&gt;O$^+)$(H&lt;sub&gt;2&lt;/sub&gt;SO$_4)$(H&lt;sub&gt;2&lt;/sub&gt;O)$_n$ cluster ions, Chem. Phys., 360, 67â€“73, doi:10.1016/j.chemphys.2009.04.007, 2009. </mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple"> Napari, I., Noppel, M., VehkamÃ¤ki, H., and Kulmala, M.: Parametrization of ternary nucleation rates for H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;-NH&lt;sub&gt;3&lt;/sub&gt;-H&lt;sub&gt;2&lt;/sub&gt;O vapors, J. Geophys. Res., 107, 4381, doi:10.1029/2002JD002132, 2002. </mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple"> Noppel, M., VehkamÃ¤ki, H., and Kulmala, M.: An improved model for hydrate formation in sulfuric-acid water nucleation, J. Chem. Phys, 116, 218â€“228, 2002. </mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple"> Ortega, I. K., KurtÃ©n, T., VehkamÃ¤ki, H., and Kulmala, M.: The role of ammonia in sulfuric acid ion induced nucleation, Atmos. Chem. Phys., 8, 2859â€“2867, 2008. </mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple"> Pickard IV, F. C., Dunn, M. E., and Shields, G. C.: Comparison of model chemistry and density functional theory thermochemical predictions with experiment for formation of ionic clusters of the ammonium cation complexed with water and ammonia; atmospheric implications, J. Phys. Chem. A, 109(22), 4905â€“4910, 2005. </mixed-citation>
</ref>
<ref id="ref26">
<label>26</label><mixed-citation publication-type="other" xlink:type="simple"> Riipinen, I., Sihto, S.-L., Kulmala, M., Arnold, F., Dal Maso, M., Birmili, W., Saarnio, K., TeinilÃ¤, K., Kerminen, V.-M., Laaksonen, A., and Lehtinen, K. E. J.: Connections between atmospheric sulphuric acid and new particle formation during QUEST IIIâ€“IV campaigns in Heidelberg and Hyytiälä, Atmos. Chem. Phys., 7, 1899â€“1914, 2007. </mixed-citation>
</ref>
<ref id="ref27">
<label>27</label><mixed-citation publication-type="other" xlink:type="simple"> Smith, J. N., Moore, K. F., Eisele, F. L., Voisin, D., Ghimire, A. K., Sakurai, H., and McMurry, P. H.: Chemical composition of atmospheric nanoparticles during nucleation events in Atlanta, J. Geophys. Res., 110, D22S03, doi:10.1029/2005JD005912, 2005. </mixed-citation>
</ref>
<ref id="ref28">
<label>28</label><mixed-citation publication-type="other" xlink:type="simple"> Yu, F.: The effect of ammonia on new particle formation: A kinetic H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;-H&lt;sub&gt;2&lt;/sub&gt;O-NH&lt;sub&gt;3&lt;/sub&gt; nucleation model constrained by laboratory measurements, J. Geophys. Res., 111, D01204, doi:10.1029/2005JD005968, 2006a. </mixed-citation>
</ref>
<ref id="ref29">
<label>29</label><mixed-citation publication-type="other" xlink:type="simple"> Yu, F.: From molecular clusters to nanoparticles: second-generation ion-mediated nucleation model, Atmos. Chem. Phys., 6, 5193â€“5211, 2006b. </mixed-citation>
</ref>
<ref id="ref30">
<label>30</label><mixed-citation publication-type="other" xlink:type="simple"> Yu, F.: An improved quasi-unary nucleation model for binary H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;-H&lt;sub&gt;2&lt;/sub&gt;O homogeneous nucleation, J. Chem. Phys., 127, 054301, doi:10.1063/1.2752171, 2007. </mixed-citation>
</ref>
<ref id="ref31">
<label>31</label><mixed-citation publication-type="other" xlink:type="simple"> Yu, F. and Turco, R. P.: Ultrafine aerosol formation via ion-mediated nucleation, Geophys. Res. Lett., 27, 883â€“886, 2000. </mixed-citation>
</ref>
<ref id="ref32">
<label>32</label><mixed-citation publication-type="other" xlink:type="simple"> Yu, F. and Turco, R.: Case studies of particle formation events observed in boreal forests: implications for nucleation mechanisms, Atmos. Chem. Phys., 8, 6085â€“6102, 2008. </mixed-citation>
</ref>
<ref id="ref33">
<label>33</label><mixed-citation publication-type="other" xlink:type="simple"> Yu, F., Wang, Z., Luo, G., and Turco, R.: Ion-mediated nucleation as an important global source of tropospheric aerosols, Atmos. Chem. Phys., 8, 2537â€“2554, 2008. </mixed-citation>
</ref>
<ref id="ref34">
<label>34</label><mixed-citation publication-type="other" xlink:type="simple"> Zhang, R. Y., Suh, I., Zhao, J., Zhang, D., Fortner, E. C., Tie, X. X., Molina, L. T., and Molina, M.: Atmospheric new particle formation enhanced by organic acids, Science, 304, 1487â€“1490, 2004. </mixed-citation>
</ref>
</ref-list>
</back>
</article>