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<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acp-8-2741-2008</article-id>
<title-group>
<article-title>Cloud system resolving model study of the roles of deep convection for photo-chemistry in the TOGA COARE/CEPEX region</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Salzmann</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Lawrence</surname>
<given-names>M. G.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Phillips</surname>
<given-names>V. T. J.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Donner</surname>
<given-names>L. J.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Max-Planck-Institute for Chemistry, Department of Atmospheric Chemistry, PO Box 3060, 55020 Mainz, Germany</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Department of Meteorology, University of Hawaii at Manoa, 2525 Correa Road, Honolulu, HI 96822, USA</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Geophysical Fluid Dynamics Laboratory, NOAA, Princeton University, PO Box 308, Princeton, NJ 08542, USA</addr-line>
</aff>
<pub-date pub-type="epub">
<day>22</day>
<month>05</month>
<year>2008</year>
</pub-date>
<volume>8</volume>
<issue>10</issue>
<fpage>2741</fpage>
<lpage>2757</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.atmos-chem-phys.net/8/2741/2008/acp-8-2741-2008.html">This article is available from http://www.atmos-chem-phys.net/8/2741/2008/acp-8-2741-2008.html</self-uri>
<self-uri xlink:href="http://www.atmos-chem-phys.net/8/2741/2008/acp-8-2741-2008.pdf">The full text article is available as a PDF file from http://www.atmos-chem-phys.net/8/2741/2008/acp-8-2741-2008.pdf</self-uri>
<abstract>
<p>A cloud system resolving model including photo-chemistry (CSRMC) has been developed based on a prototype version of the Weather Research and Forecasting (WRF) model and is used to study influences of deep convection on chemistry in the TOGA COARE/CEPEX region. Lateral boundary conditions for trace gases are prescribed from global chemistry-transport simulations, and the vertical advection of trace gases by large scale dynamics, which is not reproduced in a limited area cloud system resolving model, is taken into account. The influences of deep convective transport and of lightning on NO&lt;sub&gt;x&lt;/sub&gt;, O&lt;sub&gt;3&lt;/sub&gt;, and HO&lt;sub&gt;x&lt;/sub&gt;(=HO&lt;sub&gt;2&lt;/sub&gt;+OH),  in the vicinity of the deep convective systems are investigated in a  7-day  3-D 248&amp;times;248 km&lt;sup&gt;2&lt;/sup&gt;  horizontal domain simulation and several 2-D sensitivity runs with a 500 km horizontal domain. Mid-tropospheric entrainment is more important on average for the upward transport of O&lt;sub&gt;3&lt;/sub&gt; in the 3-D run than in the 2-D runs, but at the same time undiluted O&lt;sub&gt;3&lt;/sub&gt;-poor air from the marine boundary layer reaches the upper troposphere more frequently in the 3-D run than in the 2-D runs, indicating the presence of undiluted convective cores.   In all runs, in situ lightning is found to have only minor impacts on the local O&lt;sub&gt;3&lt;/sub&gt; budget. Near zero O&lt;sub&gt;3&lt;/sub&gt; volume mixing ratios due to the reaction with lightning-produced NO are only simulated in a 2-D sensitivity run with an extremely high number of NO molecules per flash, which is outside the range of current estimates. The fraction of NO&lt;sub&gt;x&lt;/sub&gt;  chemically lost within the domain varies between 20 and 24% in the 2-D runs, but is negligible in the 3-D run, in agreement with a lower average NO&lt;sub&gt;x&lt;/sub&gt; concentration in the 3-D run despite a greater  number of flashes.   Stratosphere to troposphere transport of O&lt;sub&gt;3&lt;/sub&gt; is simulated to occur  episodically in thin filaments in the 2-D runs, but on average net upward transport of O&lt;sub&gt;3&lt;/sub&gt; from below ~16 km is simulated in association with mean large scale ascent in the region. Ozone profiles in the TOGA COARE/CEPEX region are suggested to be strongly influenced by the intra-seasonal (Madden-Julian) oscillation.</p>
</abstract>
<counts><page-count count="17"/></counts>
</article-meta>
</front>
<body/>
<back>
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