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<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acp-12-2567-2012</article-id>
<title-group>
<article-title>Comparisons of observed and modeled OH and HO&lt;sub&gt;2&lt;/sub&gt; concentrations during the ambient measurement period of the HO&lt;sub&gt;x&lt;/sub&gt;Comp field campaign</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Kanaya</surname>
<given-names>Y.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Hofzumahaus</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Dorn</surname>
<given-names>H.-P.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Brauers</surname>
<given-names>T.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Fuchs</surname>
<given-names>H.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Holland</surname>
<given-names>F.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Rohrer</surname>
<given-names>F.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Bohn</surname>
<given-names>B.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Tillmann</surname>
<given-names>R.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Wegener</surname>
<given-names>R.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Wahner</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Kajii</surname>
<given-names>Y.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Miyamoto</surname>
<given-names>K.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Nishida</surname>
<given-names>S.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Watanabe</surname>
<given-names>K.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Yoshino</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="aff" rid="aff9">
<sup>9</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Kubistin</surname>
<given-names>D.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
<xref ref-type="aff" rid="aff10">
<sup>10</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Martinez</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Rudolf</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Harder</surname>
<given-names>H.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Berresheim</surname>
<given-names>H.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff11">
<sup>11</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Elste</surname>
<given-names>T.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Plass-Dülmer</surname>
<given-names>C.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Stange</surname>
<given-names>G.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Kleffmann</surname>
<given-names>J.</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Elshorbany</surname>
<given-names>Y.</given-names>
</name>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
<xref ref-type="aff" rid="aff12">
<sup>12</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Schurath</surname>
<given-names>U.</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Research Institute for Global Change (formerly FRCGC), Japan Agency for Marine-Earth Science and Technology, Yokohama 236-0001, Japan</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Forschungszentrum Jülich, IEK-8: Troposphäre, 52425 Jülich, Germany</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Tokyo Metropolitan University, Department of Applied Chemistry, Tokyo 192-0397, Japan</addr-line>
</aff>
<aff id="aff4">
<label>4</label>
<addr-line>Max Planck Institute for Chemistry, Atmospheric Chemistry Department, 55020 Mainz, Germany</addr-line>
</aff>
<aff id="aff5">
<label>5</label>
<addr-line>Deutscher Wetterdienst, Meteorologisches Observatorium, 82383 Hohenpeissenberg, Germany</addr-line>
</aff>
<aff id="aff6">
<label>6</label>
<addr-line>Bergische Universität Wuppertal, 42097 Wuppertal, Germany</addr-line>
</aff>
<aff id="aff7">
<label>7</label>
<addr-line>Karlsruhe Institute of Technology (KIT), IMK-AAF, 76021 Karlsruhe, Germany</addr-line>
</aff>
<aff id="aff8">
<label>8</label>
<addr-line>now at: Gifu University, Gifu 501-1193, Japan</addr-line>
</aff>
<aff id="aff9">
<label>9</label>
<addr-line>now at: Tokyo University of Agriculture and Technology, Tokyo 183-8538, Japan</addr-line>
</aff>
<aff id="aff10">
<label>10</label>
<addr-line>now at: University of Wollongong, School of Chemistry, Wollonong, NSW, Australia</addr-line>
</aff>
<aff id="aff11">
<label>11</label>
<addr-line>now at: National University of Ireland Galway, Department of Physics, Galway, Ireland</addr-line>
</aff>
<aff id="aff12">
<label>12</label>
<addr-line>now at: Max Planck Institute for Chemistry, Atmospheric Chemistry Department, 55020 Mainz, Germany</addr-line>
</aff>
<pub-date pub-type="epub">
<day>07</day>
<month>03</month>
<year>2012</year>
</pub-date>
<volume>12</volume>
<issue>5</issue>
<fpage>2567</fpage>
<lpage>2585</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.atmos-chem-phys.net/12/2567/2012/acp-12-2567-2012.html">This article is available from http://www.atmos-chem-phys.net/12/2567/2012/acp-12-2567-2012.html</self-uri>
<self-uri xlink:href="http://www.atmos-chem-phys.net/12/2567/2012/acp-12-2567-2012.pdf">The full text article is available as a PDF file from http://www.atmos-chem-phys.net/12/2567/2012/acp-12-2567-2012.pdf</self-uri>
<abstract>
<p>A photochemical box model constrained by ancillary observations was used to
simulate OH and HO&lt;sub&gt;2&lt;/sub&gt; concentrations for three days of ambient
observations during the HO&lt;sub&gt;x&lt;/sub&gt;Comp field campaign held in Jülich, Germany
in July 2005. Daytime OH levels observed by four instruments were fairly
well reproduced to within 33% by a base model run (Regional Atmospheric
Chemistry Mechanism with updated isoprene chemistry adapted from Master
Chemical Mechanism ver. 3.1) with high &lt;i&gt;R&lt;/i&gt;&lt;sup&gt;2&lt;/sup&gt; values (0.72–0.97) over a
range of isoprene (0.3–2 ppb) and NO (0.1–10 ppb) mixing ratios. Daytime
HO&lt;sub&gt;2&lt;/sub&gt;(*) levels, reconstructed from the base model results taking into
account the sensitivity toward speciated RO&lt;sub&gt;2&lt;/sub&gt; (organic peroxy) radicals,
as recently reported from one of the participating instruments in the
HO&lt;sub&gt;2&lt;/sub&gt; measurement mode, were 93% higher than the observations made by
the single instrument. This also indicates an overprediction of the HO&lt;sub&gt;2&lt;/sub&gt;
to OH recycling. Together with the good model-measurement agreement for OH,
it implies a missing OH source in the model. Modeled OH and HO&lt;sub&gt;2&lt;/sub&gt;(*)
could only be matched to the observations by addition of a strong unknown
loss process for HO&lt;sub&gt;2&lt;/sub&gt;(*) that recycles OH at a high yield. Adding to the
base model, instead, the recently proposed isomerization mechanism of
isoprene peroxy radicals (Peeters and Müller, 2010) increased OH and
HO&lt;sub&gt;2&lt;/sub&gt;(*) by 28% and 13% on average. Although these were still only
4% higher than the OH observations made by one of the instruments, larger
overestimations (42–70%) occurred with respect to the OH observations
made by the other three instruments. The overestimation in OH could be
diminished only when reactive alkanes (HC8) were solely introduced to the
model to explain the missing fraction of observed OH reactivity. Moreover,
the overprediction of HO&lt;sub&gt;2&lt;/sub&gt;(*) became even larger than in the base case.
These analyses imply that the rates of the isomerization are not readily
supported by the ensemble of radical observations. One of the measurement
days was characterized by low isoprene concentrations (&amp;sim;0.5 ppb) and
OH reactivity that was well explained by the observed species, especially
before noon. For this selected period, as opposed to the general behavior,
the model tended to underestimate HO&lt;sub&gt;2&lt;/sub&gt;(*). We found that this tendency
is associated with high NO&lt;sub&gt;x&lt;/sub&gt; concentrations, suggesting that some
HO&lt;sub&gt;2&lt;/sub&gt; production or regeneration processes under high NO&lt;sub&gt;x&lt;/sub&gt; conditions
were being overlooked; this might require revision of ozone production
regimes.</p>
</abstract>
<counts><page-count count="19"/></counts>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple"> Ammann, C., Spirig, C., Neftel, A., Steinbacher, M., Komenda, M., Schaub, A.: Application of PTR-MS for measurements of biogenic VOC in a deciduous forest, Int. J. Mass Spectrom., 239, 87–101, 2004. </mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple"> Archibald, A. T., Cooke, M. C., Utembe, S. R., Shallcross, D. E., Derwent, R. G., and Jenkin, M. E.: Impacts of mechanistic changes on HOx formation and recycling in the oxidation of isoprene, Atmos. Chem. Phys., 10, 8097–8118, http://dx.doi.org/10.5194/acp-10-8097-2010doi:10.5194/acp-10-8097-2010, 2010. </mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple"> Berresheim, H., Elste, T., Plass-Dülmer, C., Eisele, F. L., Tanner, D. J.: Chemical ionization mass spectrometer for long-term measurements of atmospheric OH and H&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;, Int. J. Mass Spectrom., 202, 91–109, http://dx.doi.org/10.1016/S1387-3806(00)00233-5doi:10.1016/S1387-3806(00)00233-5, 2000. </mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple"> Brasseur, G., Hauglustaine, D., Walters, S., Rasch, R., Müller, J.-F., Granier, C., and Tie, X.: MOZART, a global chemical transport model for ozone and related chemical tracers 1. Model description, J. Geophys. Res., 103, 28265–28289, 1998. </mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple"> Carslaw, N., Creasey, D. J., Harrison, D., Heard, D.E., Hunter, M.C., Jacobs, P. J., Jenkin, M. E., Lee, J. D., Lewis, A. C., Pilling, M. J., Saunders, S. M., and Seakins, P. W.: OH and HO&lt;sub&gt;2&lt;/sub&gt; radical chemistry in a forested region of north-western Greece, Atmos. Environ., 35, 4725–4737, 2001. </mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple"> Crounse, J. D., Paulot, F., Kjaergaard, H. G., and Wennberg, P. O.: Peroxy radical isomerization in the oxidation of isoprene, Phys. Chem. Chem. Phys., 13, 13607–13613, http://dx.doi.org/10.1039/C1CP21330Jdoi:10.1039/C1CP21330J, 2011. </mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple"> Di Carlo, P., Brune, W. H., Martinez, M., Harder, H., Lesher, R., Ren, X., Thornberry, T., Carroll, M. A., Young, V., Shepson, P. B., Riemer, D., Apel, E., and Campbell, C.: Missing OH reactivity in a forest: Evidence for unknown reactive biogenic VOCs, Science, 304, 722–725, http://dx.doi.org/10.1126/science.1094392doi:10.1126/science.1094392, 2004. </mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple"> Dillon, T. J.: Interactive comment on &quot;Detection of HO&lt;sub&gt;2&lt;/sub&gt; by laser-induced fluorescence: calibration and interferences from RO&lt;sub&gt;2&lt;/sub&gt; radicals&quot; by H. Fuchs et al., Atmos. Meas. Tech. Discuss., 4, C210–C213, 2011. </mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple"> Dillon,~T J. and Crowley,~J N.: Direct detection of OH formation in the reactions of HO&lt;sub&gt;2&lt;/sub&gt; with CH&lt;sub&gt;3&lt;/sub&gt;C(O)O&lt;sub&gt;2&lt;/sub&gt; and other substituted peroxy radicals, Atmos. Chem. Phys., 8, 4877–4889, http://dx.doi.org/10.5194/acp-8-4877-2008doi:10.5194/acp-8-4877-2008, 2008. </mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple"> Elshorbany, Y. F., Kleffmann, J., Hofzumahaus, A., Kurtenbach, R., Wiesen, P., Brauers, T., Bohn, B., Dorn, H.-P., Fuchs, H., Holland, F., Rohrer, F., Tillmann, R., Wegener, R., Wahner, A., Kanaya, Y., Yoshino, A., Nishida, S., Kajii, Y. J., Martinez, M., Kubistin, D., Harder, H., Lelieveld, J., Elste, T., Plass-Dülmer, C., Stange, G., Berresheim, H., and Schurath, U.: HOx budgets during HO&lt;sub&gt;x&lt;/sub&gt;Comp: A case study of HO&lt;sub&gt;x&lt;/sub&gt; chemistry under NO&lt;sub&gt;x&lt;/sub&gt;-limited conditions, J. Geophys. Res., 117, D03307, http://dx.doi.org/10.1029/2011JD017008doi:10.1029/2011JD017008, 2012. </mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple"> Fuchs,~H., Brauers,~T., Dorn,~H.-P., Harder,~H., Häseler,~R., Hofzumahaus,~A., Holland,~F., Kanaya,~Y., Kajii,~Y., Kubistin,~D., Lou,~S., Martinez,~M., Miyamoto,~K., Nishida,~S., Rudolf,~M., Schlosser,~E., Wahner,~A., Yoshino,~A., and Schurath,~U.: Technical Note: Formal blind intercomparison of HO&lt;sub&gt;2&lt;/sub&gt; measurements in the atmosphere simulation chamber SAPHIR during the HO&lt;sub&gt;x&lt;/sub&gt;Comp campaign, Atmos. Chem. Phys., 10, 12233–12250, http://dx.doi.org/10.5194/acp-10-12233-2010doi:10.5194/acp-10-12233-2010, 2010 </mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple"> Fuchs, H., Bohn, B., Hofzumahaus, A., Holland, F., Lu, K. D., Nehr, S., Rohrer, F., and Wahner, A.: Detection of HO&lt;sub&gt;2&lt;/sub&gt; by laser-induced fluorescence: calibration and interferences from RO&lt;sub&gt;2&lt;/sub&gt; radicals, Atmos. Meas. Tech., 4, 1209–1225, http://dx.doi.org/10.5194/amt-4-1209-2011doi:10.5194/amt-4-1209-2011, 2011. </mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple"> Heland, J., Kleffmann, J., Kurtenbach, R., and Wiesen, P.: A New Instrument to Measure Gaseous Nitrous Acid (HONO) in the Atmosphere, Environ. Sci. Technol., 35, 3207–3212, 2001. </mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple"> Hofzumahaus, A., Rohrer, F., Lu, K., Bohn, B., Brauers, T., Chang, C.-C., Fuchs, H., Holland, F., Kita, K., Kondo, Y., Li, X., Lou, S., Shao, M., Zeng, L., Wahner, A., and Zhang, Y.: Amplified Trace Gas Removal in the Troposphere, Science, 324, 1702–1704, http://dx.doi.org/10.1126/science.1164566doi:10.1126/science.1164566, 2009. </mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple"> Kanaya, Y. and Akimoto, H.: Radicals in the marine boundary layer: Testing the current tropospheric chemistry mechanism, The Chemical Record, 2, 199–211, 2002. </mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple"> Kanaya, Y. and Akimoto, H.: Gating a channel photomultiplier using a fast high voltage switch: Reduction of afterpulse rates in a laser-induced fluorescence instrument for measurement of atmospheric OH radical concentrations, Appl. Opt., 45, 1254–1259, 2006. </mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple"> Kanaya, Y., Sadanaga, Y., Hirokawa, J., Kajii, Y., and Akimoto, H.: Development of a ground-based LIF instrument for measuring HO&lt;sub&gt;x&lt;/sub&gt; radicals: Instrumentation and calibrations, J. Atmos. Chem., 38, 73–110, http://dx.doi.org/10.1023/A:1026559321911doi:10.1023/A:1026559321911, 2001. </mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple"> Kanaya, Y., Yokouchi, Y., Matsumoto, J., Nakamura, K., Kato, S., Tanimoto, H., Furutani, H., Toyota, K., and \mboxAkimoto, H.: Implications of iodine chemistry for daytime HO&lt;sub&gt;2&lt;/sub&gt; levels at Rishiri Island, Geophys. Res. Lett., 29, 1212, http://dx.doi.org/10.1029/2001GL014061doi:10.1029/2001GL014061, 2002. </mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple"> Kanaya, Y., Cao, R., Kato, S., Miyakawa, Y., Kajii, Y., Tanimoto, H., Yokouchi, Y., Mochida, M., Kawamura, K., and Akimoto, H.: Chemistry of OH and HO&lt;sub&gt;2&lt;/sub&gt; radicals observed at Rishiri Island, Japan, in September 2003: Missing daytime sink of HO&lt;sub&gt;2&lt;/sub&gt; and positive nighttime correlations with monoterpenes, J. Geophys. Res., 112, D11308, http://dx.doi.org/10.1029/2006JD007987doi:10.1029/2006JD007987, 2007a. </mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple"> Kanaya, Y., Cao, R., Akimoto, H., Fukuda, M., Komazaki, Y., Yokouchi, Y., Koike, M., Tanimoto, H., Takegawa, N., and Kondo, Y.: Urban photochemistry in central Tokyo: 1. Observed and modeled OH and HO&lt;sub&gt;2&lt;/sub&gt; radical concentrations during the winter and summer of 2004, J. Geophys. Res., 112, D21312, http://dx.doi.org/10.1029/2007JD008670doi:10.1029/2007JD008670, 2007b. </mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple"> Kleffmann, J., Gavriloaiei, T., Hofzumahaus, A., Holland, F., Koppmann, R., Rupp, L., Schlosser, E., Siese, M., and Wahner, A.: Daytime formation of nitrous acid: A major source of OH radicals in a forest, Geophys. Res. Lett., 32, L05818, http://dx.doi.org/10.1029/2005GL022524doi:10.1029/2005GL022524, 2005. </mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple"> Komenda, M., Schaub, A., and Koppmann, R.: Description and characterization of an on-line system for long-term measurements of isoprene, methyl vinyl ketone, and methacrolein in ambient air, J. Chromat. A, 995, 185–201, 2003. </mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple"> Kubistin, D., Harder, H., Martinez, M., Rudolf, M., Sander, R., Bozem, H., Eerdekens, G., Fischer, H., Gurk, C., Klüpfel, T., Königstedt, R., Parchatka, U., Schiller, C. L., Stickler, A., Taraborrelli, D., Williams, J., and Lelieveld, J.: Hydroxyl radicals in the tropical troposphere over the Suriname rainforest: comparison of measurements with the box model MECCA, Atmos. Chem. Phys., 10, 9705–9728, http://dx.doi.org/10.5194/acp-10-9705-2010doi:10.5194/acp-10-9705-2010, 2010. </mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple"> Lelieveld, J., Butler, T. M., Crowley, J., Dillon, T., Fischer, H., Ganzeveld, L., Harder, H., Lawrence, M. G., Martinez, M., Taraborrelli, D., and Williams, J.: Atmospheric oxidation capacity sustained by a tropical forest, Nature, 452, 737–740, http://dx.doi.org/10.1038/nature06870doi:10.1038/nature06870, 2008. </mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple"> Lu, K. D., Rohrer, F., Holland, F., Fuchs, H., Bohn, B., Brauers, T., Chang, C. C., Häseler, R., Hu, M., Kita, K., Kondo, Y., Li, X., Lou, S. R., Nehr, S., Shao, M., Zeng, L. M., Wahner, A., Zhang, Y. H., and Hofzumahaus, A.: Observation and modelling of OH and HO&lt;sub&gt;2&lt;/sub&gt; concentrations in the Pearl River Delta 2006: a missing OH source in a VOC rich atmosphere, Atmos. Chem. Phys., 12, 1541–1569, http://dx.doi.org/10.5194/acp-12-1541-2012doi:10.5194/acp-12-1541-2012, 2012. </mixed-citation>
</ref>
<ref id="ref26">
<label>26</label><mixed-citation publication-type="other" xlink:type="simple"> Martinez, M., Harder, H., Kovacs, T. A., Simpas, J. B., Bassis, J., Lesher, R., Brune, W. H., Frost, G. J., Willians, E. J., Stroud, C. A., Jobson, B. T., Roberts, J. M., Hall, S. R., Shetter, R. E., Wert, B., Fried, A., Akicke, B., Stutz, J., Young, V. L., White, A. B., and Zamora, R. J.: OH and HO&lt;sub&gt;2&lt;/sub&gt; concentrations, sources, and loss rates during the Southern Oxidants Study in Nashville, Tennessee, summer 1999, J. Geophys. Res., 108, 4617, http://dx.doi.org/10.1029/2003JD003551doi:10.1029/2003JD003551, 2003. </mixed-citation>
</ref>
<ref id="ref27">
<label>27</label><mixed-citation publication-type="other" xlink:type="simple"> Martinez,~M., Harder,~H., Kubistin,~D., Rudolf,~M., Bozem,~H., Eerdekens,~G., Fischer,~H., Klüpfel,~T., Gurk,~C., Königstedt,~R., Parchatka,~U., Schiller,~C L., Stickler,~A., Williams,~J., and Lelieveld,~J.: Hydroxyl radicals in the tropical troposphere over the Suriname rainforest: airborne measurements, Atmos. Chem. Phys., 10, 3759–3773, http://dx.doi.org/10.5194/acp-10-3759-2010doi:10.5194/acp-10-3759-2010, 2010. </mixed-citation>
</ref>
<ref id="ref28">
<label>28</label><mixed-citation publication-type="other" xlink:type="simple"> Mollner, A. K., Valluvadasan, S., Feng, L., Sprague, M. K., Okumura, M., Milligan, D. B., Bloss, W. J., Sander, S. P., Martien, P. T., Harley, R. A., McCoy, A. B., and Carter, W. P. L.: Rate of gas phase association of hydroxyl radical and nitrogen dioxide, Science, 330, 646–649, http://dx.doi.org/10.1126/science.1193030doi:10.1126/science.1193030, 2010. </mixed-citation>
</ref>
<ref id="ref29">
<label>29</label><mixed-citation publication-type="other" xlink:type="simple"> Paulot, F., Crounse, J. D., Kjaergaard, H. G., Kürten, A., St. Clair, J. M., Seinfeld, J. H., and Wennberg, P. O.: Unexpected epoxide formation in the gas-phase photooxidation of isoprene, Science, 325, 730–733, http://dx.doi.org/10.1126/science.1172910doi:10.1126/science.1172910, 2009. </mixed-citation>
</ref>
<ref id="ref30">
<label>30</label><mixed-citation publication-type="other" xlink:type="simple"> Peeters, J., Nguyen, T. L., and Vereecken, L.: HO&lt;sub&gt;x&lt;/sub&gt; radical regeneration in the oxidation of isoprene, Phys. Chem. Chem. Phys., 11, 5935–5939, http://dx.doi.org/10.1039/b908511ddoi:10.1039/b908511d, 2009. </mixed-citation>
</ref>
<ref id="ref31">
<label>31</label><mixed-citation publication-type="other" xlink:type="simple"> Peeters, J. and Müller, J.-F.: HOx radical regeneration in isoprene oxidation via peroxy radical isomerisations, II: Experimental evidence and global impact, Phys. Chem. Chem. Phys., 12, 14227–14235, http://dx.doi.org/10.1039/c0cp00811gdoi:10.1039/c0cp00811g, 2010. </mixed-citation>
</ref>
<ref id="ref32">
<label>32</label><mixed-citation publication-type="other" xlink:type="simple"> Pöschl, U., von Kuhlmann, R., Poisson, N., and Crutzen, P. J.: Development and intercomparison of condensed isoprene oxidation mechanisms for global atmospheric modeling, J. Atmos. Chem., 37, 29–52, 2000. </mixed-citation>
</ref>
<ref id="ref33">
<label>33</label><mixed-citation publication-type="other" xlink:type="simple"> Pugh, T. A. M., MacKenzie, A. R., Hewitt, C. N., Langford, B., Edwards, P. M., Furneaux, K. L., Heard, D. E., Hopkins, J. R., Jones, C. E., Karunaharan, A., Lee, J., Mills, G., Misztal, P., Moller, S., Monks, P. S., and Whalley, L. K.: Simulating atmospheric composition over a South-East Asian tropical rainforest: performance of a chemistry box model, Atmos. Chem. Phys., 10, 279–298, http://dx.doi.org/10.5194/acp-10-279-2010doi:10.5194/acp-10-279-2010, 2010. </mixed-citation>
</ref>
<ref id="ref34">
<label>34</label><mixed-citation publication-type="other" xlink:type="simple"> Ravishankara, A. R., Dunlea, E. J., Blitz, M. A., Dillon, T. J., Heard, D. E., Pilling, M. J., Strekowski, R. S., Nicovich, J. M., and Wine, P. H.: Redetermination of the rate coefficient for the reaction of O($^1$D) with N&lt;sub&gt;2&lt;/sub&gt;, Geophys. Res. Lett., 29, 1745, http://dx.doi.org/10.1029/2002GL014850doi:10.1029/2002GL014850, 2002. </mixed-citation>
</ref>
<ref id="ref35">
<label>35</label><mixed-citation publication-type="other" xlink:type="simple"> Ren, X., Harder, H., Martinez, M., Lesher, R. L., Oliger, A., Simpas, J. B., Brune, W. H., Schwab, J. J., Demerjian, K. L., He, Y., Xhou, X., and Gao, H.: OH and HO&lt;sub&gt;2&lt;/sub&gt; chemistry in the urban atmosphere of New York City, Atmos. Environ., 37(26), 3639–3651, 2003. </mixed-citation>
</ref>
<ref id="ref36">
<label>36</label><mixed-citation publication-type="other" xlink:type="simple"> Ren, X., Brune, W. H., Mao, J., Mitchell, M. J., Lesher, R. L., Simpas, J. B., Metcalf, A. R., Schwab, J. J., Cai, C., Li, Y., Demerjian, K. L., Felton, H. D., Boynton, G., Adams, A., Perry, J., He. Y., Zhou, X., and Hou, J.: Behavior of OH and HO&lt;sub&gt;2&lt;/sub&gt; in the winter atmosphere in New York City, Atmos. Environ., 40, S252–S263, 2006. </mixed-citation>
</ref>
<ref id="ref37">
<label>37</label><mixed-citation publication-type="other" xlink:type="simple"> Ren, X., Olson, J. R., Crawford, J. H., Brune, W. H., Mao, J., Long, R. B., Chen, Z., Chen, G., Avery, M. A., Sachse, G. W., Barrick, J. D., Diskin, G. S., Huey, L. G., Fried, A., Cohen, R. C., Heikes, B., Wennberg, P. O., Singh, H. B., Blake, D. R., and Shetter, R. E.: HO&lt;sub&gt;x&lt;/sub&gt; chemistry during INTEX-A 2004: Observation, model calculation, and comparison with previous studies, J. Geophys. Res., 113, D05310, http://dx.doi.org/10.1029/2007JD009166doi:10.1029/2007JD009166, 2008. </mixed-citation>
</ref>
<ref id="ref38">
<label>38</label><mixed-citation publication-type="other" xlink:type="simple"> Rohrer, F. and Berresheim, H.: Strong correlation between levels of tropospheric hydroxyl radicals and solar ultraviolet radiation, Nature, 442, 7099, 184–187, http://dx.doi.org/10.1038/nature04924doi:10.1038/nature04924, 2006. </mixed-citation>
</ref>
<ref id="ref39">
<label>39</label><mixed-citation publication-type="other" xlink:type="simple"> Sadanaga, Y., Yoshino, A., Kato, S., and Kajii, Y.: Measurements of OH reactivity and photochemical ozone production in the urban atmosphere, Environ. Sci. Technol., 39, 8847–8852, 2005. </mixed-citation>
</ref>
<ref id="ref40">
<label>40</label><mixed-citation publication-type="other" xlink:type="simple"> Sander, S. P., Friedl, R. R., Golden, D. M., Kurylo, M. J., Huie, R. E., Orkin, V. L., Mootgat, G. K., Ravishankara, A. R., Kolb, C. E., Molina, M. J., Finlayson-Pitts, B. J.: Chemical kinetics and photochemical data for use in stratospheric modeling, evaluation number 14, JPL Publ. 02–25, Natl. Aeronaut. Space Admin., Jet Propul. Lab., Pasadena, Calif, 2003. </mixed-citation>
</ref>
<ref id="ref41">
<label>41</label><mixed-citation publication-type="other" xlink:type="simple"> Schlosser,~E., Brauers,~T., Dorn,~H.-P., Fuchs,~H., Häseler,~R., Hofzumahaus,~A., Holland,~F., Wahner,~A., Kanaya,~Y., Kajii,~Y., Miyamoto,~K., Nishida,~S., Watanabe,~K., Yoshino,~A., Kubistin,~D., Martinez,~M., Rudolf,~M., Harder,~H., Berresheim,~H., Elste,~T., Plass-Dülmer,~C., Stange,~G., and Schurath,~U.: Technical Note: Formal blind intercomparison of OH measurements: results from the international campaign HO&lt;sub&gt;x&lt;/sub&gt;Comp, Atmos. Chem. Phys., 9, 7923–7948, http://dx.doi.org/10.5194/acp-9-7923-2009doi:10.5194/acp-9-7923-2009, 2009. </mixed-citation>
</ref>
<ref id="ref42">
<label>42</label><mixed-citation publication-type="other" xlink:type="simple"> Sommariva,~R., Haggerstone,~A.-L., Carpenter,~L J., Carslaw,~N., Creasey,~D J., Heard,~D E., Lee,~J D., Lewis,~A C., Pilling,~M J., and Zádor,~J.: OH and HO&lt;sub&gt;2&lt;/sub&gt; chemistry in clean marine air during SOAPEX-2, Atmos. Chem. Phys., 4, 839–856, http://dx.doi.org/10.5194/acp-4-839-2004doi:10.5194/acp-4-839-2004, 2004. </mixed-citation>
</ref>
<ref id="ref43">
<label>43</label><mixed-citation publication-type="other" xlink:type="simple"> Spirig, C., Neftel, A., Ammann, C., Dommen, J., Grabmer, W., Thielmann, A., Schaub, A., Beauchamp, J., Wisthaler, A., and Hansel, A.: Eddy covariance flux measurements of biogenic VOCs during ECHO~2003 using proton transfer reaction mass spectrometry, Atmos. Chem. Phys., 5, 465–481, http://dx.doi.org/10.5194/acp-5-465-2005doi:10.5194/acp-5-465-2005, 2005. </mixed-citation>
</ref>
<ref id="ref44">
<label>44</label><mixed-citation publication-type="other" xlink:type="simple"> Stavrakou,~T., Peeters,~J., and Müller,~J.-F.: Improved global modelling of HO&lt;sub&gt;x&lt;/sub&gt; recycling in isoprene oxidation: evaluation against the GABRIEL and INTEX-A aircraft campaign measurements, Atmos. Chem. Phys., 10, 9863–9878, http://dx.doi.org/10.5194/acp-10-9863-2010doi:10.5194/acp-10-9863-2010, 2010 </mixed-citation>
</ref>
<ref id="ref45">
<label>45</label><mixed-citation publication-type="other" xlink:type="simple"> Stockwell, W. R., Kirchner, F., Kuhn, M., and Seefeld, S.: A new mechanism for regional atmospheric chemistry modeling, J. Geophys. Res., 102(D22), 25847–25880, 1997. </mixed-citation>
</ref>
<ref id="ref46">
<label>46</label><mixed-citation publication-type="other" xlink:type="simple"> Stone,~D., Evans,~M J., Edwards,~P M., Commane,~R., Ingham,~T., Rickard,~A R., Brookes,~D M., Hopkins,~J., Leigh,~R J., Lewis,~A C., Monks,~P S., Oram,~D., Reeves,~C E., Stewart,~D., and Heard,~D E.: Isoprene oxidation mechanisms: measurements and modelling of OH and HO&lt;sub&gt;2&lt;/sub&gt; over a South-East Asian tropical rainforest during the OP3 field campaign, Atmos. Chem. Phys., 11, 6749–6771, http://dx.doi.org/10.5194/acp-11-6749-2011doi:10.5194/acp-11-6749-2011, 2011. </mixed-citation>
</ref>
<ref id="ref47">
<label>47</label><mixed-citation publication-type="other" xlink:type="simple"> Tan, D., Faloona, I., Simpas, J. B., Brune, W., Shepson, P. B., Couch, T. L., Sumner, A. L., Carroll, M. A., Thornberry, T., Apel, E., Riemer, D., Stockwell, W.: HO&lt;sub&gt;x&lt;/sub&gt; budgets in a deciduous forest: Results from the PROPHET summer 1998 campaign, J. Geophys. Res., 106, 24407–24427, 2001. </mixed-citation>
</ref>
<ref id="ref48">
<label>48</label><mixed-citation publication-type="other" xlink:type="simple"> Taraborrelli, D., Lawrence, M. G., Butler, T. M., Sander, R., and Lelieveld, J.: Mainz Isoprene Mechanism 2 (MIM2): an isoprene oxidation mechanism for regional and global atmospheric modelling, Atmos. Chem. Phys., 9, 2751–2777, http://dx.doi.org/10.5194/acp-9-2751-2009doi:10.5194/acp-9-2751-2009, 2009. </mixed-citation>
</ref>
<ref id="ref49">
<label>49</label><mixed-citation publication-type="other" xlink:type="simple"> Wennberg, P. O., Hanisco, T. F., Jaeglé, L., Jacob, D. J., Hintsa, E. J., Lanzendorf, E. J., Anderson, J. G., Gao, R.-S., Keim, E. R., Donnelly, S. G., Del Negro, L. A., Fahey, D. W., McKeen, S. A., Salawitch, R. J., Webster, C. R., May, R. D., Herman, R. L., Proffitt, M. H., Margitan, J. J., Atlas, E. L., Schauffler, S. M., Flocke, F., McElroy, C. T., and Bui, T. P.: Hydrogen Radicals, Nitrogen Radicals, and the Production of O&lt;sub&gt;3&lt;/sub&gt; in the Upper Troposphere, Science, 279, 49–53, http://dx.doi.org/10.1126/science.279.5347.49doi:10.1126/science.279.5347.49, 1998. </mixed-citation>
</ref>
<ref id="ref50">
<label>50</label><mixed-citation publication-type="other" xlink:type="simple"> Whalley, L. K., Edwards, P. M., Furneaux, K. L., Goddard, A., Ingham, T., Evans, M. J., Stone, D., Hopkins, J. R., Jones, C. E., Karunaharan, A., Lee, J. D., Lewis, A. C., Monks, P. S., Moller, S. J., and Heard, D. E.: Quantifying the magnitude of a missing hydroxyl radical source in a tropical rainforest, Atmos. Chem. Phys., 11, 7223–7233, http://dx.doi.org/10.5194/acp-11-7223-2011doi:10.5194/acp-11-7223-2011, 2011. </mixed-citation>
</ref>
<ref id="ref51">
<label>51</label><mixed-citation publication-type="other" xlink:type="simple"> Yoshino, A., Sadanaga, Y., Watanabe, K., Kato, S., Miyakawa, Y., Matsumoto, J., and Kajii, Y.: Measurement of total OH reactivity by laser-induced pump and probe technique – comprehensive observations in the urban atmosphere of Tokyo, Atmos. Environ., 40, 7869–7881, 2006. </mixed-citation>
</ref>
<ref id="ref52">
<label>52</label><mixed-citation publication-type="other" xlink:type="simple"> Zhang, L., Brook, J. R., and Vet, R.: A revised parameterization for gaseous dry deposition in air-quality models, Atmos. Chem. Phys., 3, 2067–2082, http://dx.doi.org/10.5194/acp-3-2067-2003doi:10.5194/acp-3-2067-2003, 2003. </mixed-citation>
</ref>
</ref-list>
</back>
</article>