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<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>GÃ¶ttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acp-11-6749-2011</article-id>
<title-group>
<article-title>Isoprene oxidation mechanisms: measurements and modelling of OH and HO&lt;sub&gt;2&lt;/sub&gt; over a South-East Asian tropical rainforest during the OP3 field campaign</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Stone</surname>
<given-names>D.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Evans</surname>
<given-names>M. J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Edwards</surname>
<given-names>P. M.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Commane</surname>
<given-names>R.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff9">
<sup>9</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Ingham</surname>
<given-names>T.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Rickard</surname>
<given-names>A. R.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Brookes</surname>
<given-names>D. M.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Hopkins</surname>
<given-names>J.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Leigh</surname>
<given-names>R. J.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Lewis</surname>
<given-names>A. C.</given-names>
</name>
<xref ref-type="aff" rid="aff5">
<sup>5</sup>
</xref>
<xref ref-type="aff" rid="aff6">
<sup>6</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Monks</surname>
<given-names>P. S.</given-names>
</name>
<xref ref-type="aff" rid="aff4">
<sup>4</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Oram</surname>
<given-names>D.</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Reeves</surname>
<given-names>C. E.</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<xref ref-type="aff" rid="aff8">
<sup>8</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Stewart</surname>
<given-names>D.</given-names>
</name>
<xref ref-type="aff" rid="aff7">
<sup>7</sup>
</xref>
<xref ref-type="aff" rid="aff10">
<sup>10</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Heard</surname>
<given-names>D. E.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>School of Earth &amp; Environment, University of Leeds, Leeds, UK</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>School of Chemistry, University of Leeds, Leeds, UK</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>National Centre for Atmospheric Science, University of Leeds, Leeds, UK</addr-line>
</aff>
<aff id="aff4">
<label>4</label>
<addr-line>Department of Chemistry, University of Leicester, Leicester, UK</addr-line>
</aff>
<aff id="aff5">
<label>5</label>
<addr-line>Department of Chemistry, University of York, York, UK</addr-line>
</aff>
<aff id="aff6">
<label>6</label>
<addr-line>National Centre for Atmospheric Science, University of York, York, UK</addr-line>
</aff>
<aff id="aff7">
<label>7</label>
<addr-line>School of Environmental Sciences, University of East Anglia, Norwich, UK</addr-line>
</aff>
<aff id="aff8">
<label>8</label>
<addr-line>National Centre for Atmospheric Science, University of East Anglia, Norwich, UK</addr-line>
</aff>
<aff id="aff9">
<label>9</label>
<addr-line>now at: School of Engineering &amp; Applied Sciences, Harvard University, Cambridge, USA</addr-line>
</aff>
<aff id="aff10">
<label>10</label>
<addr-line>now at: Department of Chemistry, University of Reading, Reading, UK</addr-line>
</aff>
<pub-date pub-type="epub">
<day>14</day>
<month>07</month>
<year>2011</year>
</pub-date>
<volume>11</volume>
<issue>13</issue>
<fpage>6749</fpage>
<lpage>6771</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.atmos-chem-phys.net/11/6749/2011/acp-11-6749-2011.html">This article is available from http://www.atmos-chem-phys.net/11/6749/2011/acp-11-6749-2011.html</self-uri>
<self-uri xlink:href="http://www.atmos-chem-phys.net/11/6749/2011/acp-11-6749-2011.pdf">The full text article is available as a PDF file from http://www.atmos-chem-phys.net/11/6749/2011/acp-11-6749-2011.pdf</self-uri>
<abstract>
<p>Forests are the dominant source of volatile organic compounds into the
atmosphere, with isoprene being the most significant species. The oxidation
chemistry of these compounds is a significant driver of local, regional and
global atmospheric composition. Observations made over Borneo during the OP3
project in 2008, together with an observationally constrained box model are
used to assess our understanding of this oxidation chemistry. In line with
previous work in tropical forests, we find that the standard model based on
MCM chemistry significantly underestimates the observed OH concentrations.
Geometric mean observed to modelled ratios of OH and HO&lt;sub&gt;2&lt;/sub&gt; in airmasses
impacted with isoprene are 5.32&lt;sub&gt;&amp;minus;4.43&lt;/sub&gt;&lt;sup&gt;+3.68&lt;/sup&gt; 
and 1.18&lt;sub&gt;&amp;minus;0.30&lt;/sub&gt;&lt;sup&gt;+0.30&lt;/sup&gt;
respectively, with 68 % of the observations being within the specified
variation. We implement a variety of mechanistic changes into the model,
including epoxide formation and unimolecular decomposition of isoprene peroxy
radicals, and assess their impact on the model success. We conclude that none
of the current suggestions can simultaneously remove the bias from both OH
and HO&lt;sub&gt;2&lt;/sub&gt; simulations and believe that detailed laboratory studies are now
needed to resolve this issue.</p>
</abstract>
<counts><page-count count="23"/></counts>
</article-meta>
</front>
<body/>
<back>
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