<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACP</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACP</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7324</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>GÃ¶ttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acp-10-9993-2010</article-id>
<title-group>
<article-title>Estimation of ECHAM5 climate model closure parameters with adaptive MCMC</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>JÃ¤rvinen</surname>
<given-names>H.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>RÃ¤isÃ¤nen</surname>
<given-names>P.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Laine</surname>
<given-names>M.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Tamminen</surname>
<given-names>J.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Ilin</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Oja</surname>
<given-names>E.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Solonen</surname>
<given-names>A.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Haario</surname>
<given-names>H.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>Finnish Meteorological Institute, Helsinki, Finland</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Aalto University School of Science and Technology, Espoo, Finland</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Lappeenranta University of Technology, Lappeenranta, Finland</addr-line>
</aff>
<pub-date pub-type="epub">
<day>25</day>
<month>10</month>
<year>2010</year>
</pub-date>
<volume>10</volume>
<issue>20</issue>
<fpage>9993</fpage>
<lpage>10002</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.atmos-chem-phys.net/10/9993/2010/acp-10-9993-2010.html">This article is available from http://www.atmos-chem-phys.net/10/9993/2010/acp-10-9993-2010.html</self-uri>
<self-uri xlink:href="http://www.atmos-chem-phys.net/10/9993/2010/acp-10-9993-2010.pdf">The full text article is available as a PDF file from http://www.atmos-chem-phys.net/10/9993/2010/acp-10-9993-2010.pdf</self-uri>
<abstract>
<p>Climate models contain closure parameters to which the model climate
  is sensitive. These parameters appear in physical parameterization
  schemes where some unresolved variables are expressed by predefined
  parameters rather than being explicitly modeled. Currently, best
  expert knowledge is used to define the optimal closure parameter
  values, based on observations, process studies, large eddy
  simulations, etc. Here, parameter estimation, based on the adaptive
  Markov chain Monte Carlo (MCMC) method, is applied for estimation of
  joint posterior probability density of a small number (&lt;i&gt;n&lt;/i&gt;=4) of
  closure parameters appearing in the ECHAM5 climate model. The
  parameters considered are related to clouds and precipitation and
  they are sampled by an adaptive random walk process of the MCMC. The
  parameter probability densities are estimated simultaneously for all
  parameters, subject to an objective function. Five alternative
  formulations of the objective function are tested, all related to
  the net radiative flux at the top of the atmosphere. Conclusions of
  the closure parameter estimation tests with a low-resolution ECHAM5
  climate model indicate that (i) adaptive MCMC is a viable option for
  parameter estimation in large-scale computational models, and (ii)
  choice of the objective function is crucial for the identifiability
  of the parameter distributions.</p>
</abstract>
<counts><page-count count="10"/></counts>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple"> AMIP Project Office: AMIP II guidelines, AMIP Newsletter, 8, http://www-pcmdi.llnl.gov/projects/amip/NEWS/amipnl8.php, 1996. </mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple"> Andrieu, C. and Moulines, E.: On the ergodicity properties of some adaptive MCMC algorithms, Ann. Appl. Prob., 16, 1462â€“1505, doi:10.1214/105051606000000286, 2006 </mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple"> Annan, J D. and Hargreaves, J C.: Efficient estimation and ensemble generation in climate modeling, Phil. Trans. R. Soc. A, 365, 2077â€“2088, \doi10.1098/rsta.2007.2067, 2007. </mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple"> Dee, D P.: Bias and data assimilation, Q. J. R. Meteorol. Soc., 131, 3323â€“3343, \doi10.1256/qj.05.137, 2005. </mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple"> Haario, H., Saksman, E., and Tamminen, J.: An adaptive Metropolis algorithm, Bernoulli, 7, 223â€“242, 2001. </mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple"> Haario, H., Laine, M., Lehtinen, M., Saksman, E., and Tamminen, J.: MCMC methods for high dimensional inversion in remote sensing (with discussion), J. Roy. Stat. Soc. B, 66, 591â€“607, 2004. </mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple"> Haario, H., Saksman, E., and Tamminen, J.: Componentwise adaptation for high dimensional MCMC, Comput. Stat., 20, 265â€“273, \doi10.1007/BF02789703, 2005. </mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple"> Haario, H., Laine, M., Mira, A., and Saksman, E.: DRAM: Efficient adaptive MCMC, Stat. Comput., 16, 339â€“354, \doi10.1007/s11222-006-9438-0, 2006. </mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple"> Ilin, A., Valpola, H., and Oja, E.: Exploratory Analysis of Climate Data Using Source Separation Methods, Neural Networks, 19, 155â€“167, 2006. </mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple"> Jackson, C S., Sen, M K., Huerta, G., Deng, Y., and Bowman, K P.: Error Reduction and Convergence in Climate Prediction, J. Climate, 21, 6698â€“6709, \doi10.1175/2008JCLI2112.1, 2008. </mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple"> Loeb, N G., Wielicki, B A., Doelling, D R., Smith, G L., Keyes, D F., Kato, S., Manalo-Smith, N., and Wong, T.: Toward optimal closure of the Earth&apos;s top-of-atmosphere radiation budget, J. Climate, 22, 748â€“766, 2009. </mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple"> Martin, G M., Johnson, D W., and Spice, A.: The measurement and parameterization of effective radius of droplets in warm stratocumulus, J. Atmos. Sci., 51, 1823â€“1842, 1994. </mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple"> Mellor, G L. and Yamada, A.: A hierarchy of turbulence closure models for planetary boundary layers, J. Atmos. Sci., 31, 1791â€“1806, 1974. </mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple"> Metropolis, N., Rosenbluth, A W., Rosenbluth, M N., Teller, A H., and Teller, E.: Equation of State Calculations by Fast Computing Machines, J. Chem. Phys., 21, 1087â€“1092, 1953. </mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple"> Navon, I M.: Practical and theoretical aspects of adjoint parameter estimation and identifiability in meteorology and oceanography, Dynam. Atmos. Ocean., 27, 55â€“79, 1993. </mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple"> Rinne, J. and JÃ¤rvinen, H.: Estimation of the Cressman term for a barotropic model through optimization with use of the adjoint model, Mon. Weather Rev., 121, 825â€“833, 1993. </mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple"> Robert, C P. and Casella, G.: Monte Carlo Statistical Methods, Springer, New York, USA, second edn., 2005. </mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple"> Roeckner, E., BÃ¤uml, G., Bonaventura, L., Brokopf, R., Esch, M., Giorgetta, M., Hagemann, S., Kirchner, I., Kornblueh, L., Manzini, E., Rhodin, A., Schlese, U., Schulzweida, U., and Tompkins, A.: The atmospheric general circulation model ECHAM5, Part I Model Description, Tech. Rep. No. 349, Max-Planck-Institut für Meteorologie, 2003. </mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple"> Roeckner, E., Brokopf, R., Esch, M., Giorgetta, M., Hagemann, S., Kornblueh, L., Manzini, E., Schlese, U., and Schulzweida, U.: Sensitivity of simulated climate to horizontal and vertical resolution in the ECHAM5 atmosphere model, J. Climate, 19, 3771â€“3791, 2006. </mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple"> Rossow, W. and DueÃ±as, E N.: The International Satellite Cloud Climatology Project (ISCCP) web site: An online resource for research., Bull. Am. Meteorol. Soc., 85, 167â€“172, 2004. </mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple"> Rossow, W B., Walker, A., and Roiter, M.: International Satellite Cloud Climatology Project (ISCCP) documentation of new cloud datasets, Tech.\ Rep. WMO/TD-737 349, World Meteorological Organization, 1996. </mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple"> Tuomi, M., Thum, T., JÃ¤rvinen, H., Fronzek, S., Berg, B., Harmon, M., Trofymow, J A., Sevanto, S., and Liski, J.: Leaf litter decomposition â€“ Estimates of global variability based on Yasso07 model, Ecological Modelling, 220, 3362â€“3371, \doi10.1016/j.ecolmodel.2009.05.016, 2009. </mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple"> Uppala, S M., KÃ¥llberg, P W., Simmons, A J., Andrae, U., Bechtold, V D C., Fiorino, M., Gibson, J K., Haseler, J., Hernandez, A., Kelly, G A., Li, X., Onogi, K., Saarinen, S., Sokka, N., Allan, R P., Andersson, E., Arpe, K., Balmaseda, M A., Beljaars, A C M., Berg, L V D., Bidlot, J., Bormann, N., Caires, S., Chevallier, F., Dethof, A., Dragosavac, M., Fisher, M., Fuentes, M., Hagemann, S., HÃ³lm, E., Hoskins, B J., Isaksen, L., Janssen, P A E M., Jenne, R., McNally, A P., Mahfouf, J., Morcrette, J., Rayner, N A., Saunders, R W., Simon, P., Sterl, A., Trenberth, K E., Untch, A., Vasiljevic, D., Viterbo, P., and Woollen, J.: The ERA-40 re-analysis, Q. J. Roy. Meteorol. Soc., 131, 2961â€“3012, \doi10.1256/qj.04.176, 2005. </mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple"> Villagran, A., Huerta, G., Jackson, C S., and Sen, M K.: Computational Methods for Parameter Estimation in Climate Models, Bay. Anal., 3, 1â€“27, 2008. </mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple"> Xie, P. and Arkin, P.: Global precipitation: A 17-year monthly analysis based on gauge observations, satellite estimates, and numerical model outputs, Bull. Am. Meteorol. Soc., 78, 2539â€“2558, 1997. </mixed-citation>
</ref>
</ref-list>
</back>
</article>